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[netCDF #IYA-535944]: build troubles


This seems like an odd error, as you're following the directions so far.  The 
variables do seem to be set correctly.  What happens if you do an 'ls 
${H5DIR}/lib', what are the contents listed?  If there is a 'libhdf5.settings' 
file, can you provide that?



> Hello,
> I'm working to build the netCDF libraries as directed here:
> https://www.unidata.ucar.edu/software/netcdf/docs/getting_and_building_netcdf.html
> i've gotten through zlib and hdf5 successfully. I don't think i'll need DAP
> so i didn't bother with Curl.
> i've gotten to the line
> $ CPPFLAGS='-I${H5DIR}/include -I${ZDIR}/include' LDFLAGS='-L${H5DIR}/lib
> -L${ZDIR}/lib' ./configure --prefix=${NCDIR} --disable-dap
> which throws the configure: error: Can't find or link to the hdf5 library.
> Use --disable-netcdf-4, or see config.log for errors.
> i've set the LD_Library_PATH
> (base) [spike@cloudbreak netcdf-c-4.7.3]$ echo $LD_LIBRARY_PATH
> /usr/local/HDF5/lib
> the HDF/include is included in the CPPFLAGS (which i assume is correct)
> (base) [spike@cloudbreak netcdf-c-4.7.3]$ echo ${H5DIR}/include
> /usr/local/HDF5/include
> (base) [spike@cloudbreak netcdf-c-4.7.3]$ ls ${H5DIR}/include
> H5ACpublic.h  H5Cpublic.h   H5DSpublic.h  H5FDcore.h    H5FDhdfs.h
> H5FDmpio.h    H5FDros3.h   H5FDwindows.h  H5IMpublic.h  H5Lpublic.h
> H5Opublic.h   H5PLpublic.h  H5pubconf.h  H5Spublic.h   H5version.h
> hdf5_hl.h
> H5api_adpt.h  H5DOpublic.h  H5Epubgen.h   H5FDdirect.h  H5FDlog.h
> H5FDmulti.h   H5FDsec2.h   H5Fpublic.h    H5Ipublic.h   H5LTpublic.h
> H5overflow.h  H5Ppublic.h   H5public.h   H5TBpublic.h  H5Zpublic.h
> H5Apublic.h   H5Dpublic.h   H5Epublic.h   H5FDfamily.h  H5FDmpi.h
> H5FDpublic.h  H5FDstdio.h  H5Gpublic.h    H5LDpublic.h  H5MMpublic.h
> H5PLextern.h  H5PTpublic.h  H5Rpublic.h  H5Tpublic.h   hdf5.h
> I run:
> CPPFLAGS='-I${H5DIR}/include -I${ZDIR}/include' LDFLAGS='-L${H5DIR}/lib
> -L${ZDIR}/lib' ./configure --prefix=${NCDIR} --disable-dap
> ...again throws error: configure: error: Can't find or link to the hdf5
> library. Use --disable-netcdf-4, or see config.log for errors.
> from:
> https://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg13261.html
> i should see values in the config.log file (attached) if i had the same
> problem, but since they're set, i don't think i'm seeing the same problems.
> ac_cv_env_CPPFLAGS_set=set
> ac_cv_env_CPPFLAGS_value='-I${H5DIR}/include -I${ZDIR}/include'
> ac_cv_env_LDFLAGS_set=set
> ac_cv_env_LDFLAGS_value='-L${H5DIR}/lib -L${ZDIR}/lib'
> Everything i can find, seems to suggest setting those, which i think i've
> done, so any help would be greatly appreciated!
> spicer


Ticket Details
Ticket ID: IYA-535944
Department: Support netCDF
Priority: Normal
Status: Closed
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