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Re: 20051114: netcdf-perl-1.2.3



Mark,

Interesting.  Looks like your C runtime library is missing the math
functions.

Try this:

    1.  Go to the top-level source-directory.

    2.  Set the variable LIBS in the file CUSTOMIZE to "-lm" to
        reference the math library.

    3.  Execute the command "make distclean", then the configure script,
        then "make", then "make install", etc.

Regards,
Steve Emmerson

------- Original Message

Date:    Wed, 16 Nov 2005 10:58:31 -0700
From:    Mark Seefeldt <address@hidden>To:      Steve Emmerson <ste
          address@hidden>
Subject: Re: 20051114: netcdf-perl-1.2.3

This is a multi-part message in MIME format.
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Steve Emmerson wrote:

>> I am doing the installation using sudo, which seems to not behave as 
>> well with multiple commands on a single line.
> 
> Must be a non-standard user-shell.

No, I think it is a standard user-shell, which means it might be a 
non-standard user.

> Looks like your compiler needs help.
> 
> Instead of c89(1), try gcc(1): modify CC in CUSTOMIZE, do a "make
> distclean", and reattempt the build.

I changed the CC in CUSTOMIZE.  Did a "make distclean", then 
"./configure", and finally "make".  At that point I noticed another 
error in the make.log.  I have attached the log files.

Thanks

Mark

--------------080601070606020102030900
Content-Type: text/x-log;
 name="configure.log"
Content-Transfer-Encoding: 7bit
Content-Disposition: inline;
 filename="configure.log"

checking for manual-page index command... 
checking for C compiler... gcc
checking type of operating system... linux
checking for dependency generation mechanism... gcc -M
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking the C preprocessor... works
checking for C const... yes
checking for C volatile... yes
checking for C signed... yes
checking for C function prototypes... yes
checking for standard C variadic functions... yes
checking for standard C string generation... yes
checking for standard C token pasting... yes
checking C void pointer... yes
checking for ar... ar
checking for tar flags... -chof
checking for ranlib... ranlib
checking binary distribution directory... /home/ftp/pub/binary/dummy_system
checking the installation prefix... /usr/local/udunits-1.12.4
checking the installation exec-prefix... /usr/local/udunits-1.12.4
checking for neqn... neqn
checking for tbl... tbl
checking for ar... (cached) ar
checking for C math library... 
checking for return sin(0.0) != 0 in default library(s)... yes
checking style for cfortran.h... Standard
checking for Fortran integer type equivalent to C pointer... integer*4
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking C header file <stddef.h> for typedef size_t... declared
checking for stddef.h... (cached) yes
checking C header file <stddef.h> for typedef ptrdiff_t... declared
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking for stdlib.h... (cached) yes
checking C header file <stdlib.h> for typedef size_t... declared
checking for atexit... yes
checking for stdlib.h... (cached) yes
checking C header file <stdlib.h> for function atexit()... declared
checking for getenv... yes
checking for stdlib.h... (cached) yes
checking C header file <stdlib.h> for function getenv()... declared
checking for string.h... (cached) yes
checking C header file <string.h> for typedef size_t... declared
checking for strerror... yes
checking for string.h... (cached) yes
checking C header file <string.h> for function strerror()... declared
checking for string.h... (cached) yes
checking C header file <string.h> for function strchr()... declared
checking for string.h... (cached) yes
checking C header file <string.h> for function strcpy()... declared
checking for string.h... (cached) yes
checking C header file <string.h> for function strrchr()... declared
checking for string.h... (cached) yes
checking C header file <string.h> for function strncpy()... declared
checking for string.h... (cached) yes
checking C header file <string.h> for function strtok()... declared
checking for strstr... yes
checking for string.h... (cached) yes
checking C header file <string.h> for function strstr()... declared
checking for memmove... yes
checking for string.h... (cached) yes
checking C header file <string.h> for function memmove()... declared
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking C header file <time.h> for typedef time_t... declared
checking for time.h... (cached) yes
checking C header file <time.h> for typedef size_t... declared
checking for difftime... yes
checking for time.h... (cached) yes
checking C header file <time.h> for function difftime()... declared
checking for strftime... yes
checking for time.h... (cached) yes
checking C header file <time.h> for function strftime()... declared
checking search.h usability... yes
checking search.h presence... yes
checking for search.h... yes
checking C header file <search.h> for typedef ENTRY... declared
checking for search.h... (cached) yes
checking C header file <search.h> for typedef ACTION... declared
checking for search.h... (cached) yes
checking C header file <search.h> for typedef VISIT... declared
checking for tsearch... yes
checking for search.h... (cached) yes
checking C header file <search.h> for function tsearch()... declared
checking for tfind... yes
checking for search.h... (cached) yes
checking C header file <search.h> for function tfind()... declared
checking for tdelete... yes
checking for search.h... (cached) yes
checking C header file <search.h> for function tdelete()... declared
checking for twalk... yes
checking for search.h... (cached) yes
checking C header file <search.h> for function twalk()... declared
checking for perl... perl
checking for type of perl executable to create... dynamic
checking for position-independent compilation flags... ''
configure: creating ./config.status
config.status: creating Makefile
config.status: creating lib/Makefile
config.status: creating lib/udunits.inc
config.status: creating udunits/Makefile
config.status: creating perl/Makefile.PL
config.status: creating port/master.mk
config.status: creating port/Makefile
config.status: creating port/misc/Makefile
config.status: creating port/cfortran/Makefile
config.status: creating port/misc/udposix.h
config.status: executing default commands
expanding `include's in file `Makefile'
expanding `include's in file `lib/Makefile'
expanding `include's in file `lib/udunits.inc'
expanding `include's in file `udunits/Makefile'
expanding `include's in file `perl/Makefile.PL'
expanding `include's in file `port/master.mk'
expanding `include's in file `port/Makefile'
expanding `include's in file `port/misc/Makefile'
expanding `include's in file `port/cfortran/Makefile'

--------------080601070606020102030900
Content-Type: text/plain;
 name="CUSTOMIZE"
Content-Transfer-Encoding: 7bit
Content-Disposition: inline;
 filename="CUSTOMIZE"

# This file is for customizing the configuation process performed by
# `./configure'.  This file consists of sh(1) variable-definition lines.
# The value given to those variable by this file will override their default
# values.
#
# You can also customize the configuration process via the environment
# variables seen by ./configure.  For example:
#
#     In csh(1):
#         % setenv CC acc
#         & setenv CFLAGS -g
#         % ./configure
#
#     In sh(1):
#         $ CC=acc CFLAGS=-g ./configure
#
# Variables in this file override the environmental ones.
#
#############################################################################
#
# Type of C compiler (default is `cc'):
# CC='gcc'
CC=gcc
#
# C compiler flags (default is `-O'):
# CFLAGS=-g
CFLAGS=-O2
#
# C preprocessor flags (default is `-DNDEBUG'):
# CPPFLAGS=-DDEBUG
CPPFLAGS=-DpgiFortran
#
# Installation prefix (default is `../..'):
# prefix=/usr/local/unidata
#
# Ancillary libraries.  SunOS 4 user's might need something like the
# following in order to resolve strerror() in the perl/ subdirectory.
# LIBS='-L/usr/lang/SC3.0.1/lib -lansi'

--------------080601070606020102030900
Content-Type: text/x-log;
 name="make.log"
Content-Transfer-Encoding: 7bit
Content-Disposition: inline;
 filename="make.log"


making `all' in directory /usr/local/udunits-1.12.4/src/port

make[1]: Entering directory `/usr/local/udunits-1.12.4/src/port'

making `all' in directory /usr/local/udunits-1.12.4/src/port/misc

make[2]: Entering directory `/usr/local/udunits-1.12.4/src/port/misc'
gcc -c -O2 -I.  -D_REENTRANT -DpgiFortran uddummy.c
ar rcuv libudport.a uddummy.o 
a - uddummy.o
case "" in \
'') ;; \
*)  ar rucv libudport.a ;; \
esac
ranlib libudport.a
make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/port/misc'

returning to directory /usr/local/udunits-1.12.4/src/port


making `all' in directory /usr/local/udunits-1.12.4/src/port/cfortran

make[2]: Entering directory `/usr/local/udunits-1.12.4/src/port/cfortran'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/port/cfortran'

returning to directory /usr/local/udunits-1.12.4/src/port

make[1]: Leaving directory `/usr/local/udunits-1.12.4/src/port'

returning to directory /usr/local/udunits-1.12.4/src


making `all' in directory /usr/local/udunits-1.12.4/src/lib

make[1]: Entering directory `/usr/local/udunits-1.12.4/src/lib'
ln -s ../port/misc/udalloc.c .
ln -s ../port/misc/udalloc.h .
gcc -c -O2 -I../port/misc -I../port/cfortran -DUT_DEFAULT_PATH='"/usr/local/udu
nits-1.12.4/etc/udunits.dat"' -DpgiFortran utlib.c
In file included from utlib.c:1127:
utlib.c: In function `utInit':
utlib.c:1051: warning: passing arg 1 of `ReadUnits' discards qualifiers from po
inter target type
gcc -c -O2 -I../port/misc -I../port/cfortran -DUT_DEFAULT_PATH='"/usr/local/udu
nits-1.12.4/etc/udunits.dat"' -DpgiFortran utparse.c
gcc -c -O2 -I../port/misc -I../port/cfortran -DUT_DEFAULT_PATH='"/usr/local/udu
nits-1.12.4/etc/udunits.dat"' -DpgiFortran utscan.c
gcc -c -O2 -I../port/misc -I../port/cfortran -DUT_DEFAULT_PATH='"/usr/local/udu
nits-1.12.4/etc/udunits.dat"' -DpgiFortran udalloc.c
ar rcuv libudunits.a utlib.o utparse.o utscan.o udalloc.o
a - utlib.o
a - utparse.o
a - utscan.o
a - udalloc.o
case "" in \
'') ;; \
*)  ar rucv libudunits.a ;; \
esac
ranlib libudunits.a
make[1]: Leaving directory `/usr/local/udunits-1.12.4/src/lib'

returning to directory /usr/local/udunits-1.12.4/src


making `all' in directory /usr/local/udunits-1.12.4/src/udunits

make[1]: Entering directory `/usr/local/udunits-1.12.4/src/udunits'
make[2]: Entering directory `/usr/local/udunits-1.12.4/src/udunits'
gcc -c -O2 -I../lib -I../port/misc -DpgiFortran udunits.c
gcc -o udunits -O2 udunits.o -L/usr/local/udunits-1.12.4/src/lib -ludunits -L/u
sr/local/udunits-1.12.4/src/port/misc -ludport
/usr/local/udunits-1.12.4/src/lib/libudunits.a(utlib.o)(.text+0x438): In functi
on `dectime':
: undefined reference to `fmod'
/usr/local/udunits-1.12.4/src/lib/libudunits.a(utlib.o)(.text+0xb2b): In functi
on `utRaise':
: undefined reference to `pow'
/usr/local/udunits-1.12.4/src/lib/libudunits.a(utlib.o)(.text+0xf69): In functi
on `utPrint':
: undefined reference to `log10'
collect2: ld returned 1 exit status
make[2]: *** [udunits] Error 1
make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/udunits'
make[1]: *** [program] Error 2
make[1]: Leaving directory `/usr/local/udunits-1.12.4/src/udunits'
make: *** [udunits/all] Error 1

--------------080601070606020102030900--

------- End of Original Message


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