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[netCDF #DJO-251143]: A very urgent question

Hello,

Can you provide the `config.log` file generated by `configure`?  There are 
additional steps needed if you installed hdf5 in a non-standard location.  The 
information in config.log will help me figure out what the exact failure is.

Thank you!

-Ward
> Hey i am trying to download netcdf for 2 days now and i keep facing the
> same error
> i have downloaded hdf5 library properly yet it keep refusing toread it and
> keeing sending an error
> please help
> root@mostafahaggag-Lenovo-ideapad-700-15ISK:/home/mostafahaggag/Downloads/netcdf-4.6.0#
> ./configure
> configure: netCDF 4.6.0
> checking build system type... x86_64-pc-linux-gnu
> checking host system type... x86_64-pc-linux-gnu
> checking target system type... x86_64-pc-linux-gnu
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for a thread-safe mkdir -p... /bin/mkdir -p
> checking for gawk... no
> checking for mawk... mawk
> checking whether make sets $(MAKE)... yes
> checking whether make supports nested variables... yes
> checking whether to enable maintainer-specific portions of Makefiles... no
> configure: checking user options
> checking whether a NCIO_MINBLOCKSIZE was specified... 256
> checking if fsync support is enabled... no
> checking if jna bug workaround is enabledd... no
> checking whether extra valgrind tests should be run... no
> checking whether we should build netCDF-4... yes
> checking do we require hdf5 dynamic-loading support... yes
> checking whether reading of HDF4 SD files is to be enabled... no
> checking whether to fetch some sample HDF4 files from Unidata ftp site to
> test HDF4 reading (requires wget)... no
> checking whether we should attempt to install netcdf-fortran
> (EXPERIMENTAL)... no
> checking whether extra example tests should be run... no
> checking whether parallel IO tests should be run... no
> checking whether a default chunk size in bytes was specified... 4194304
> checking whether a maximum per-variable cache size for HDF5 was
> specified... 67108864
> checking whether a number of chunks for the default per-variable cache was
> specified... 10
> checking whether a default file cache size for HDF5 was specified... 4194304
> checking whether a default file cache maximum number of elements for HDF5
> was specified... 1009
> checking whether a default cache preemption for HDF5 was specified... 0.75
> checking whether netCDF-4 logging is enabled... no
> checking whether DAP client(s) are to be built... yes
> checking for style of include used by make... GNU
> checking for gcc... gcc
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ISO C89... none needed
> checking whether gcc understands -c and -o together... yes
> checking dependency style of gcc... gcc3
> checking for curl_easy_setopt in -lcurl... no
> configure: libcurl not found; disabling remote protocol(s) support
> checking whether dap remote testing should be enabled (default on)... no
> checking whether dap remote authorization testing should be enabled
> (default off)... no
> checking whether netcdf4 group names for DAP2 hould be enabled (default
> on)... yes
> configure: DAP2 groups is being disabled because DAP2 support is  disabled
> or netcdf-4 disabled
> checking which remote test server(s) to use... remotetest.unidata.ucar.edu,
> jetstream.unidata.ucar.edu (defaults)
> checking whether the time-consuming dap tests should be enabled (default
> off)... no
> checking whether to enable strict null-byte header padding when reading
> (default off)... no
> checking whether CDF5 support should be enabled (default off)... no
> checking whether FFIO will be used... no
> checking whether STDIO will be used... no
> checking whether examples should be built... yes
> checking whether v2 netCDF API should be built... yes
> checking whether the ncgen/ncdump/nccopy should be built... yes
> checking whether test should be built and run... yes
> checking whether large file (> 2GB) tests should be run... no
> checking whether benchmarks should be run (experimental)... no
> checking whether extreme numbers should be used in tests... yes
> checking where to put large temp files if large file tests are run... .
> configure: finding C compiler
> checking for gcc... (cached) gcc
> checking whether we are using the GNU C compiler... (cached) yes
> checking whether gcc accepts -g... (cached) yes
> checking for gcc option to accept ISO C89... (cached) none needed
> checking whether gcc understands -c and -o together... (cached) yes
> checking dependency style of gcc... (cached) gcc3
> checking for an ANSI C-conforming const... yes
> checking whether CURLOPT_USERNAME is defined... no
> checking whether CURLOPT_PASSWORD is defined... no
> checking whether CURLOPT_KEYPASSWD is defined... no
> checking whether CURLINFO_RESPONSE_CODE is defined... no
> checking whether CURLOPT_CHUNK_BGN_FUNCTION is defined... no
> configure: setting up libtool
> checking how to print strings... printf
> checking for a sed that does not truncate output... /bin/sed
> checking for grep that handles long lines and -e... /bin/grep
> checking for egrep... /bin/grep -E
> checking for fgrep... /bin/grep -F
> checking for ld used by gcc... /usr/bin/ld
> checking if the linker (/usr/bin/ld) is GNU ld... yes
> checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
> checking the name lister (/usr/bin/nm -B) interface... BSD nm
> checking whether ln -s works... yes
> checking the maximum length of command line arguments... 1572864
> checking how to convert x86_64-pc-linux-gnu file names to
> x86_64-pc-linux-gnu format... func_convert_file_noop
> checking how to convert x86_64-pc-linux-gnu file names to toolchain
> format... func_convert_file_noop
> checking for /usr/bin/ld option to reload object files... -r
> checking for objdump... objdump
> checking how to recognize dependent libraries... pass_all
> checking for dlltool... no
> checking how to associate runtime and link libraries... printf %s\n
> checking for ar... ar
> checking for archiver @FILE support... @
> checking for strip... strip
> checking for ranlib... ranlib
> checking command to parse /usr/bin/nm -B output from gcc object... ok
> checking for sysroot... no
> checking for a working dd... /bin/dd
> checking how to truncate binary pipes... /bin/dd bs=4096 count=1
> checking for mt... mt
> checking if mt is a manifest tool... no
> checking how to run the C preprocessor... gcc -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking for dlfcn.h... yes
> checking for objdir... .libs
> checking if gcc supports -fno-rtti -fno-exceptions... no
> checking for gcc option to produce PIC... -fPIC -DPIC
> checking if gcc PIC flag -fPIC -DPIC works... yes
> checking if gcc static flag -static works... yes
> checking if gcc supports -c -o file.o... yes
> checking if gcc supports -c -o file.o... (cached) yes
> checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared
> libraries... yes
> checking whether -lc should be explicitly linked in... no
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... yes
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... yes
> configure: finding other utilities
> checking for m4... m4
> checking for doxygen... no
> configure: WARNING: Doxygen not found - documentation will not be built
> checking for dot... no
> configure: WARNING: dot not found - will use simple charts in documentation
> checking for special C compiler options needed for large files... no
> checking for _FILE_OFFSET_BITS value needed for large files... no
> configure: displaying some results
> checking CPPFLAGS...
> checking CC CFLAGS... gcc
> checking type gcc... gcc is /usr/bin/gcc
> checking CXX... unset
> checking FC... unset
> checking F90... unset
> checking AR... ar
> checking AR_FLAGS... cru
> checking type ar... ar is /usr/bin/ar
> checking NM... /usr/bin/nm -B
> checking NMFLAGS...
> configure: checking types, headers, and functions
> checking for stdlib.h... (cached) yes
> checking for sys/types.h... (cached) yes
> checking sys/dir.h usability... yes
> checking sys/dir.h presence... yes
> checking for sys/dir.h... yes
> checking sys/param.h usability... yes
> checking sys/param.h presence... yes
> checking for sys/param.h... yes
> checking for dirent.h that defines DIR... yes
> checking for library containing opendir... none required
> checking for ANSI C header files... (cached) yes
> checking for sys/wait.h that is POSIX.1 compatible... yes
> checking whether time.h and sys/time.h may both be included... yes
> checking locale.h usability... yes
> checking locale.h presence... yes
> checking for locale.h... yes
> checking stdio.h usability... yes
> checking stdio.h presence... yes
> checking for stdio.h... yes
> checking stdarg.h usability... yes
> checking stdarg.h presence... yes
> checking for stdarg.h... yes
> checking errno.h usability... yes
> checking errno.h presence... yes
> checking for errno.h... yes
> checking ctype.h usability... yes
> checking ctype.h presence... yes
> checking for ctype.h... yes
> checking fcntl.h usability... yes
> checking fcntl.h presence... yes
> checking for fcntl.h... yes
> checking malloc.h usability... yes
> checking malloc.h presence... yes
> checking for malloc.h... yes
> checking for stdlib.h... (cached) yes
> checking for string.h... (cached) yes
> checking for strings.h... (cached) yes
> checking for unistd.h... (cached) yes
> checking for sys/stat.h... (cached) yes
> checking getopt.h usability... yes
> checking getopt.h presence... yes
> checking for getopt.h... yes
> checking sys/time.h usability... yes
> checking sys/time.h presence... yes
> checking for sys/time.h... yes
> checking for vprintf... yes
> checking for _doprnt... no
> checking sys/resource.h usability... yes
> checking sys/resource.h presence... yes
> checking for sys/resource.h... yes
> checking sys/cdefs.h usability... yes
> checking sys/cdefs.h presence... yes
> checking for sys/cdefs.h... yes
> checking for stdbool.h that conforms to C99... yes
> checking for _Bool... yes
> checking ftw.h usability... yes
> checking ftw.h presence... yes
> checking for ftw.h... yes
> checking for strlcat... no
> checking for strerror... yes
> checking for snprintf... yes
> checking for strchr... yes
> checking for strrchr... yes
> checking for strcat... yes
> checking for strcpy... yes
> checking for strdup... yes
> checking for strcasecmp... yes
> checking for strtod... yes
> checking for strtoll... yes
> checking for strtoull... yes
> checking for strstr... yes
> checking for mkstemp... yes
> checking for mktemp... yes
> checking for rand... yes
> checking for random... yes
> checking for memcmp... yes
> checking for getrlimit... yes
> checking for gettimeofday... yes
> checking for fsync... yes
> checking for MPI_Comm_f2c... no
> checking whether in-memory files are enabled... yes
> checking for memmove... yes
> checking for getpagesize... yes
> checking for sysconf... yes
> checking whether mmap is enabled for in-memory files... no
> checking for stdlib.h... (cached) yes
> checking for unistd.h... (cached) yes
> checking for sys/param.h... (cached) yes
> checking for getpagesize... (cached) yes
> checking for working mmap... yes
> checking for mremap... yes
> checking for size_t... yes
> checking for working alloca.h... yes
> checking for alloca... yes
> checking whether isnan is declared... yes
> checking whether isinf is declared... yes
> checking whether isfinite is declared... yes
> checking whether signbit is declared... yes
> checking for struct stat.st_blksize... yes
> checking for IEEE floating point format... yes
> checking for size_t... (cached) yes
> checking for ssize_t... yes
> checking for ptrdiff_t... yes
> checking for schar... no
> checking for uchar... no
> checking for longlong... no
> checking for ushort... yes
> checking for uint... yes
> checking for int64... no
> checking for uint64 off_t... no
> checking for size_t... (cached) yes
> checking for off_t... yes
> checking whether char is unsigned... no
> checking whether byte ordering is bigendian... no
> checking size of short... 2
> checking size of int... 4
> checking size of long... 8
> checking size of long long... 8
> checking size of float... 4
> checking size of double... 8
> checking size of off_t... 8
> checking size of size_t... 8
> checking size of unsigned long long... 8
> checking size of unsigned long long... (cached) 8
> checking size of unsigned char... 1
> checking size of ushort... 2
> checking size of uint... 4
> checking size of ushort... (cached) 2
> checking size of uint... (cached) 4
> checking size of ptrdiff_t... 8
> checking size of ssize_t... 8
> checking size of void*... 8
> checking for library containing deflate... -lz
> checking for floor in -lm... yes
> checking for dlfcn.h... (cached) yes
> checking for dlopen in -ldl... yes
> checking for library containing H5Fflush... no
> configure: error: Can't find or link to the hdf5 library. Use
> --disable-netcdf-4, or see config.log for errors.
> 
> 


Ticket Details
===================
Ticket ID: DJO-251143
Department: Support netCDF
Priority: Normal
Status: Closed
===================
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