Dan, > I got there in the end. I added the path to the mpif77 compiler to the > configure command and the make check succeeded and the install looks to have > gone through. I changed the below commands to: > > CC=/usr/local/bin/mpicc FC=/usr/local/bin/mpif90 F77=/usr/local/bin/mpif77 > CPPFLAGS=-I/usr/local/include LDFLAGS=-L/usr/local/lib ./configure > --prefix=/usr/local --disable-fortran-type-check. Thanks for letting us know what worked. I didn't know mpif77 has to be specified for a Fortran parallel build, so I'll add that to the docs ... --Russ > ------------------------------------------------------------------------------------------------------------ > Daniel Potter > PhD Student > Room B46 LEC 3 > Lancaster Environmental Centre > > ________________________________________ > From: Potter, Dan > Sent: 05 June 2015 10:33 > To: address@hidden > Subject: RE: [netCDF #WHC-184184]: (No Subject) > > Hi Russ, > > So I have run into a problem with the build. I am getting the following error > output: > > Making check in nf_test > make[1]: Entering directory `/home/dan/netcdf-fortran-4.4.2/nf_test' > make nf_test tst_f77_v2 ftst_vars ftst_vars2 ftst_vars3 ftst_vars4 > ftst_vars5 ftst_vars6 ftst_types ftst_types2 ftst_types3 ftst_groups > ftst_path ftst_rengrps f90tst_vars tst_types tst_types2 f90tst_vars_vlen > tst_f90_nc4 f90tst_grps f90tst_fill f90tst_fill2 f90tst_vars3 f90tst_vars4 > f90tst_vars2 f90tst_path f90tst_rengrps ftst_v2 ftest tst_f90 > make[2]: Entering directory `/home/dan/netcdf-fortran-4.4.2/nf_test' > /bin/bash ../libtool --tag=F77 --mode=link -I../fortran -I../fortran > -L/usr/local/lib -o nf_test f03lib_f_interfaces.o test_get.o test_put.o > nf_error.o nf_test.o test_read.o test_write.o util.o f03lib.o > ../fortran/libnetcdff.la -lnetcdf > Usage: /home/dan/netcdf-fortran-4.4.2/libtool [OPTION]... [MODE-ARG]... > Try 'libtool --help' for more information. > libtool: error: unrecognised option: '-I../fortran' > make[2]: *** [nf_test] Error 1 > make[2]: Leaving directory `/home/dan/netcdf-fortran-4.4.2/nf_test' > make[1]: *** [check-am] Error 2 > make[1]: Leaving directory `/home/dan/netcdf-fortran-4.4.2/nf_test' > make: *** [check-recursive] Error 1 > > My input up to this point has been: > > CC=/usr/local/bin/mpicc FC=/usr/local/bin/mpif90 > CPPFLAGS=-I/usr/local/include LDFLAGS=-L/usr/local/lib ./configure > --prefix=/usr/local --disable-fortran-type-check > make check > > Cheers, > Dan > > ------------------------------------------------------------------------------------------------------------ > Daniel Potter > PhD Student > Room B46 LEC 3 > Lancaster Environmental Centre > > ________________________________________ > From: Unidata netCDF Support address@hidden > Sent: 04 June 2015 16:32 > To: Potter, Dan > Cc: address@hidden > Subject: [netCDF #WHC-184184]: (No Subject) > > Hi Dan, > > Here is the documentation for building the netCDF-Fortran library. Please > let us > know if you have problems with it or it's not clear: > > http://www.unidata.ucar.edu/netcdf/docs/building_netcdf_fortran.html > > --Russ > > > regarding my previous problem, I fixed that. I had compiled my HDF5 library > > using mpicc so I configured like so: > > > > CPPFLAGS=-I/usr/local/include LDFLAGS=-L/usr/local/lib > > CC=/usr/local/bin/mpicc ./configure --prefix=/usr/local/ --enable-parallel > > > > and the library built just fine. I have just noticed now that the commands > > I sent earlier I copy and pasted the wrong command for uncompressing my > > download. However, I have now run into an issue with the build for the > > netcdf-fortran build. There is no documentation to assist with the build so > > I am going at it blind. I tried the same command more or less: > > > > CPPFLAGS=-I/usr/local/include LDFLAGS=-L/usr/local/lib > > FC=/usr/local/bin/mpif90 F90=/usr/local/bin/mpif90 > > F77=/usr/local/bin/mpif77 CC=/usr/local/bin/mpicc ./configure > > --prefix=/usr/local/ --enable-parallel > > > > but make check fails and gives the following error: > > > > Error: Symbol 'nf_endian_big' at (1) has no IMPLICIT type > > ftst_vars.F:98.63: > > > > retval = nf_def_var_fletcher32(ncid, varid, NF_FLETCHER32) > > 1 > > Error: Symbol 'nf_fletcher32' at (1) has no IMPLICIT type > > ftst_vars.F:81.48: > > > > retval = nf_def_var(ncid, "data", NF_INT64, NDIMS, dimids, varid) > > 1 > > Error: Symbol 'nf_int64' at (1) has no IMPLICIT type > > ftst_vars.F:69.46: > > > > retval = nf_create(FILE_NAME, NF_NETCDF4, ncid) > > 1 > > Error: Symbol 'nf_netcdf4' at (1) has no IMPLICIT type > > ftst_vars.F:56.15: > > > > retval = nf_set_chunk_cache(CACHE_SIZE, CACHE_NELEMS, > > 1 > > Error: Function 'nf_set_chunk_cache' at (1) has no IMPLICIT type > > ftst_vars.F:61.15: > > > > retval = nf_get_chunk_cache(cache_size_in, cache_nelems_in, > > 1 > > Error: Function 'nf_get_chunk_cache' at (1) has no IMPLICIT type > > ftst_vars.F:87.15: > > > > retval = nf_def_var_chunking(ncid, varid, 0, chunks) > > 1 > > Error: Function 'nf_def_var_chunking' at (1) has no IMPLICIT type > > ftst_vars.F:96.15: > > > > retval = nf_def_var_deflate(ncid, varid, 0, 1, 4) > > 1 > > Error: Function 'nf_def_var_deflate' at (1) has no IMPLICIT type > > ftst_vars.F:102.15: > > > > retval = nf_inq_var_deflate(ncid, varid, shuffle, deflate, > > 1 > > Error: Function 'nf_inq_var_deflate' at (1) has no IMPLICIT type > > ftst_vars.F:107.15: > > > > retval = nf_inq_var_fletcher32(ncid, varid, checksum) > > 1 > > Error: Function 'nf_inq_var_fletcher32' at (1) has no IMPLICIT type > > ftst_vars.F:110.15: > > > > retval = nf_inq_var_chunking(ncid, varid, contiguous, chunks_in) > > 1 > > Error: Function 'nf_inq_var_chunking' at (1) has no IMPLICIT type > > ftst_vars.F:115.15: > > > > retval = nf_inq_var_endian(ncid, varid, endianness) > > 1 > > Error: Function 'nf_inq_var_endian' at (1) has no IMPLICIT type > > ftst_vars.F:141.15: > > > > retval = nf_inq_var_deflate(ncid, varid, shuffle, deflate, > > 1 > > Error: Function 'nf_inq_var_deflate' at (1) has no IMPLICIT type > > ftst_vars.F:146.15: > > > > retval = nf_inq_var_fletcher32(ncid, varid, checksum) > > 1 > > Error: Function 'nf_inq_var_fletcher32' at (1) has no IMPLICIT type > > ftst_vars.F:149.15: > > > > retval = nf_inq_var_chunking(ncid, varid, contiguous, chunks_in) > > 1 > > Error: Function 'nf_inq_var_chunking' at (1) has no IMPLICIT type > > ftst_vars.F:154.15: > > > > retval = nf_inq_var_endian(ncid, varid, endianness) > > 1 > > Error: Function 'nf_inq_var_endian' at (1) has no IMPLICIT type > > make[2]: *** [ftst_vars.o] Error 1 > > make[2]: Leaving directory `/home/dan/netcdf-fortran-4.4.2/nf_test' > > make[1]: *** [check-am] Error 2 > > make[1]: Leaving directory `/home/dan/netcdf-fortran-4.4.2/nf_test' > > make: *** [check-recursive] Error 1 > > > > Any ideas? Or is there any documentation out there to assist with the build > > of the fortran library? > > > > Cheers, > > Dan > > > > ------------------------------------------------------------------------------------------------------------ > > Daniel Potter > > PhD Student > > Room B46 LEC 3 > > Lancaster Environmental Centre > > > > ________________________________________ > > From: Potter, Dan > > Sent: 03 June 2015 11:41 > > To: address@hidden > > Subject: > > > > Hi there, > > > > I am trying to build netcdf but have run into an issue which suggests > > sending the attached file to this address. The commands I have entered to > > this point have been: > > > > gunzip < netcdf-fortran-4.4.2.tar.gz | tar xf - > > cd netcdf-4.3.3.1 > > CPPFLAGS=-I/usr/local/include LDFLAGS=-L/usr/local/lib ./configure > > --prefix=/usr/local/ > > make check > > > > I am using Linux Mint 17.1. > > > > Cheers, > > Dan > > > > ------------------------------------------------------------------------------------------------------------ > > Daniel Potter > > PhD Student > > Room B46 LEC 3 > > Lancaster Environmental Centre > > > > Russ Rew UCAR Unidata Program > address@hidden http://www.unidata.ucar.edu > > > > Ticket Details > =================== > Ticket ID: WHC-184184 > Department: Support netCDF > Priority: Normal > Status: Closed > > Russ Rew UCAR Unidata Program address@hidden http://www.unidata.ucar.edu Ticket Details =================== Ticket ID: WHC-184184 Department: Support netCDF Priority: Normal Status: Closed
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