Greetings, Would you please tell me the output from this command: nm /home/ronnieleeper/prgfiles/netcdf/lib/libnetcdff.so | grep nf_create Thanks! Sean > I have gotten the makefile to print the command generating the netcdf > errors. > > g95 -Wno=101,139,155,158 -ffree-form -ffree-line-length-huge -fendian=big > -fno-second-underscore -I/home/ronnieleeper/prgfiles/netcdf/include > -I../ioapi_share -O2 -Wno=101,139,155,158 -ffree-form > -ffree-line-length-huge -fendian=big -fno-second-underscore -o diffwrf > diffwrf.o wrf_io.o field_routines.o module_wrfsi_static.o > ../../frame/wrf_debug.o ../../frame/module_wrf_error.o > -L/home/ronnieleeper/WRFv3.3/WRFV3/external/esmf_time_f90 -lesmf_time > -L/home/ronnieleeper/prgfiles/netcdf/lib -lnetcdff -lnetcdf > > Even with the linking flag I still get those errors. Is there something > else missing? I have noticed that each of the object files are where the > netcdf errors are coming from for this compiled line. > > Thanks in advance, > > Ronald David Leeper > USCRN Quality Assurance Specialist, NCDC > Research Associate, CICS-NC > Global Climate Applications Division > National Climatic Data Center > 151 Patton Ave. > Asheville, NC 28801-5001 > address@hidden > address@hidden > Office: (828) 257-3185 > Fax: (828) 271-4022 > > > > On 8/25/11 12:28 PM, "Unidata netCDF Support" > <address@hidden> wrote: > > > Greetings! > > > > The issue is that you didn't tell g95 to link to the netCDF libs - don't > > forget to add the linking flag to your g95 command: > > > > -L/home/ronnieleeper/prgfiles/netcdf/lib -lnetcdff > > > > netcdf.inc is for the netCDF3 interface - there is a netcdf4.inc that takes > > care of the netCDF4 interface. Are you compiling WRF? If so, it only uses > > the > > netCDF3 interface (they haven't updated their src to take advantage of > > netCDF4); No worries though, because the netCDF4 lib is backwards compatible > > with netCDF3, so you don't have to hunt the netcdf3 src to make things work. > > > > Cheers! > > > > Sean > > > >> So I have had some success with the netcdf install; however, the original > >> program I am trying to install in all of this complains about undefined > >> references to hundreds of netcdf functions such as: > >> > >> g95 -Wno=101,139,155,158 -ffree-form -ffree-line-length-huge -fendian=big > >> -fno-second-underscore -c -I/home/ronnieleeper/prgfiles/netcdf/include > >> -I../ioapi_share diffwrf.f > >> diffwrf io_netcdf is being built now. > >> diffwrf.o:(.data+0x50): undefined reference to `nf__open_' > >> diffwrf.o:(.data+0x58): undefined reference to `nf__enddef_' > >> diffwrf.o:(.data+0x60): undefined reference to `nf_abort_' > >> diffwrf.o:(.data+0x68): undefined reference to `nf__open_mp_' > >> diffwrf.o:(.data+0x70): undefined reference to `nf__create_mp_' > >> diffwrf.o:(.data+0x78): undefined reference to `nf__create_' > >> diffwrf.o:(.data+0x80): undefined reference to `nf_copy_att_' > >> diffwrf.o:(.data+0x88): undefined reference to `nf_create_' > >> diffwrf.o:(.data+0x90): undefined reference to `nf_copy_var_' > >> > >> Something rather interesting is that when I looked at netcdf.inc it said > >> it > >> was NETCDF 3. > >> > >> ! NetCDF-3. > >> ! > >> ! netcdf version 3 fortran interface: > >> ! > >> > >> ! > >> ! external netcdf data types: > >> ! > >> integer nf_byte > >> integer nf_int1 > >> integer nf_char > >> integer nf_short > >> integer nf_int2 > >> integer nf_int > >> integer nf_float > >> integer nf_real > >> integer nf_double > >> > >> parameter (nf_byte = 1) > >> parameter (nf_int1 = nf_byte) > >> parameter (nf_char = 2) > >> parameter (nf_short = 3) > >> parameter (nf_int2 = nf_short) > >> parameter (nf_int = 4) > >> parameter (nf_float = 5) > >> parameter (nf_real = nf_float) > >> parameter (nf_double = 6) > >> > >> Is it suppose to be 3? I thought we were install netcdf-4? None of my > >> command line configure arguments disable netcdf4 I donÂt think. > >> > >> I'm trying a reinstall of netcdf again. > >> > >> Ronald David Leeper > >> USCRN Quality Assurance Specialist, NCDC > >> Research Associate, CICS-NC > >> Global Climate Applications Division > >> National Climatic Data Center > >> 151 Patton Ave. > >> Asheville, NC 28801-5001 > >> address@hidden > >> address@hidden > >> Office: (828) 257-3185 > >> Fax: (828) 271-4022 > >> > >> > >> > >> On 8/24/11 1:16 PM, "Unidata netCDF Support" > >> <address@hidden> wrote: > >> > >>> > Ah, yes. --enable-shared should be used for both szlib and zlib. > >>> > > >>> > We'll get this working, no worries! > >>> > > >>> > Sean > >>> > > >>> > > >>>> >> Thanks for you help in this regard. It would see that make, make > >>>> check, and > >>>> >> make install all completed without any major/halting errors; > >>>> however, > >>>> make > >>>> >> check-install did error. > >>>> >> > >>>> >> ./dsetexample: error while loading shared libraries: libsz.so.2: > >>>> cannot open > >>>> >> shared object file: No such file or directory > >>>> >> > >>>> >> In my szip install, I don't have this file. I think I may have > >>>> installed it > >>>> >> with ?disable-shared configure option. I'm currently reconfiguring > >>>> szip > >>>> >> without this flag. I think we are close to getting hdf5 installed. > >>>> >> > >>>> >> Thanks again, > >>>> >> > >>>> >> Ronald David Leeper > >>>> >> USCRN Quality Assurance Specialist, NCDC > >>>> >> Research Associate, CICS-NC > >>>> >> Global Climate Applications Division > >>>> >> National Climatic Data Center > >>>> >> 151 Patton Ave. > >>>> >> Asheville, NC 28801-5001 > >>>> >> address@hidden > >>>> >> address@hidden > >>>> >> Office: (828) 257-3185 > >>>> >> Fax: (828) 271-4022 > >>>> >> > >>>> >> > >>>> >> > >>>> >> On 8/24/11 12:34 PM, "Unidata netCDF Support" > >>>> >> <address@hidden> wrote: > >>>> >> > >>>>>> >>> > Does the HDF5 compile work with the new zlib? > >>>>>> >>> > > >>>>>>>> >>>> >> I'll recompile zlib with that flag such. In addition, the > output of > >>>>>> >>>> file > >>>>>>>> >>>> >> /home/ronnieleeper/prgfiles/zlib/lib/libz.a was: > >>>>>>>> >>>> >> > >>>>>>>> >>>> >> /home/ronnieleeper/prgfiles/zlib/lib/libz.a: current ar > archive > >>>>>>>> >>>> >> > >>>>>>>> >>>> >> Ronald David Leeper > >>>>>>>> >>>> >> USCRN Quality Assurance Specialist, NCDCResearch > >>>>>>>> Associate, > CICS-NC > >>>>>>>> >>>> >> Global Climate Applications Division > >>>>>>>> >>>> >> National Climatic Data Center > >>>>>>>> >>>> >> 151 Patton Ave. > >>>>>>>> >>>> >> Asheville, NC 28801-5001 > >>>>>>>> >>>> >> address@hidden > >>>>>>>> >>>> >> address@hidden > >>>>>>>> >>>> >> Office: (828) 257-3185 > >>>>>>>> >>>> >> Fax: (828) 271-4022 > >>>>>>>> >>>> >> > >>>>>>>> >>>> >> > >>>>>>>> >>>> >> > >>>>>>>> >>>> >> On 8/24/11 12:02 PM, "Unidata netCDF Support" > >>>>>>>> >>>> >> <address@hidden> wrote: > >>>>>>>> >>>> >> > >>>>>>>>>>>> >>>>>> >>> > file /home/ronnieleeper/prgfiles/zlib/lib/libz.a > >>>>>>>> >>>> >> > >>>>>>>> >>>> >> > >>>>>>>> >>>> >> > >>>>>>>> >>>> >> > >>>>>> >>> > > >>>>>> >>> > > >>>>>> >>> > Ticket Details > >>>>>> >>> > =================== > >>>>>> >>> > Ticket ID: XXN-487077 > >>>>>> >>> > Department: Support netCDF > >>>>>> >>> > Priority: Normal > >>>>>> >>> > Status: Open > >>>>>> >>> > > >>>>>> >>> > > >>>> >> > >>>> >> > >>>> >> > >>>> >> > >>> > > >>> > > >>> > Ticket Details > >>> > =================== > >>> > Ticket ID: XXN-487077 > >>> > Department: Support netCDF > >>> > Priority: Normal > >>> > Status: Open > >>> > > >>> > > >> > >> > >> > >> > > > > > > Ticket Details > > =================== > > Ticket ID: XXN-487077 > > Department: Support netCDF > > Priority: Normal > > Status: Open > > > > > > > > Ticket Details =================== Ticket ID: XXN-487077 Department: Support netCDF Priority: Normal Status: Open
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