Can you patch not just 4.2.4 but 4.2.2 - until we resolve what went on with our
proxying we can not use 4.2.4. I am also wondering if what we were seeing was
a very slow rebuild of the aggregations because so much was being printed out -
which enormously slows done code, and the exceptions were happening because of
the slow rebuild.
-Roy
On Feb 23, 2011, at 7:33 AM, John Caron wrote:
> hi roy, kyle:
>
> it looks like an old version may have crept into the release, that turned on
> a spurious debug message. we will get a fix out today i hope.
>
> im very interested in how 4.2.x handles aggregation, please keep me posted.
>
> thanks!
>
>
> On 2/23/2011 8:27 AM, Roy Mendelssohn wrote:
>> Okay it appears to have something to do with building the aggregations. On a
>> clean start up, it went through every file and then stopped, at least for
>> awhile. The problem is we have hundreds of thousands of files (yes this is
>> correct two of our datasets alone are over 20.000 files), and catalina.out
>> grows to be a very large size. I assume there must be a way to suppress
>> writing this, but I don't know how. Up to these changes, our catlaina.out
>> over even over a month from a "ls -l" was about 3400 or so , now in a few
>> hours it is many (with the emphasis on many) orders of magnitude larger.
>>
>> -Roy
>>
>>
>>
>>
>> On Feb 23, 2011, at 6:27 AM, Kyle Wilcox wrote:
>>
>>> I'm also seeing this in catalina.out
>>>
>>> ...
>>> regexp .*\.nc$ on
>>> /data/ftp/upload/Shelf_Hypoxia/dal/roms/his_mch_052_0065.nc match=true
>>> regexp .*\.nc$ on
>>> /data/ftp/upload/Shelf_Hypoxia/dal/roms/his_mch_052_0066.nc match=true
>>> regexp .*\.nc$ on
>>> /data/ftp/upload/Shelf_Hypoxia/dal/roms/his_mch_052_0080.nc match=true
>>> ...
>>>
>>>
>>> [minime@testbedapps ~]# java -version
>>> java version "1.6.0_21"
>>> Java(TM) SE Runtime Environment (build 1.6.0_21-b06)
>>> Java HotSpot(TM) 64-Bit Server VM (build 17.0-b16, mixed mode)
>>>
>>> THREDDS Data Server Version 4.2.1 Build Date = 2010-12-01 20:28:24
>>> Build Name = 1
>>>
>>>
>>>> -----Original Message-----
>>>> From: thredds-bounces@xxxxxxxxxxxxxxxx [mailto:thredds-
>>>> bounces@xxxxxxxxxxxxxxxx] On Behalf Of John Caron
>>>> Sent: Tuesday, February 22, 2011 6:31 PM
>>>> Cc: THREDDS community
>>>> Subject: Re: [thredds] Fwd: Release Announcement: CPU11_01 Java SE
>>>> Critical Patch Update
>>>>
>>>> On 2/22/2011 4:01 PM, Roy Mendelssohn wrote:
>>>>> We did this update. Do to some other problems, I noticed our
>>>> catalina.out was huge. We got expressions like:
>>>>> regexp .*\.nc$ on regexp .*\.nc$ on
>>>> /u00/satellite/cwtest2/aqua/modis/mercator/chlora/D1/MODSCW_P2009106_C3
>>>> _1755_1930_1935_GM05_closest_chlor
>>>>> a.nc match=true
>>>>>
>>>>> that are filling up our catalina.out . No other changes were made.
>>>> Even switching back to out old java does not seem to correct this.
>>>>> Any ideas of what is going on?
>>>>>
>>>>> -Roy
>>>> any chance theres a classpath problem, eg a spurious netcdf.jar from an
>>>> old version ?
>>>>
>>>>
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>> **********************
>> "The contents of this message do not reflect any position of the U.S.
>> Government or NOAA."
>> **********************
>> Roy Mendelssohn
>> Supervisory Operations Research Analyst
>> NOAA/NMFS
>> Environmental Research Division
>> Southwest Fisheries Science Center
>> 1352 Lighthouse Avenue
>> Pacific Grove, CA 93950-2097
>>
>> e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address)
>> voice: (831)-648-9029
>> fax: (831)-648-8440
>> www: http://www.pfeg.noaa.gov/
>>
>> "Old age and treachery will overcome youth and skill."
>> "From those who have been given much, much will be expected"
>
**********************
"The contents of this message do not reflect any position of the U.S.
Government or NOAA."
**********************
Roy Mendelssohn
Supervisory Operations Research Analyst
NOAA/NMFS
Environmental Research Division
Southwest Fisheries Science Center
1352 Lighthouse Avenue
Pacific Grove, CA 93950-2097
e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address)
voice: (831)-648-9029
fax: (831)-648-8440
www: http://www.pfeg.noaa.gov/
"Old age and treachery will overcome youth and skill."
"From those who have been given much, much will be expected"
