[netcdfgroup] ncview-2.0beta4 builds on OSX 10.6.3 (Xcode 3.2.3 and gfortran-42-5659.pkg) with netcdf-4.1.2beta and hdf5-1.8.4-patch1

  • To: Pierce Dave <pierce@xxxxxxxxxxxxxxx>
  • Subject: [netcdfgroup] ncview-2.0beta4 builds on OSX 10.6.3 (Xcode 3.2.3 and gfortran-42-5659.pkg) with netcdf-4.1.2beta and hdf5-1.8.4-patch1
  • From: John Helly <hellyj@xxxxxxxx>
  • Date: Mon, 2 Aug 2010 10:51:16 -0700
Hi Dave.

Here's the script.

#!/bin/bash
make distclean
export CC=/usr/bin/cc 
./configure --prefix=/usr/local/ncview-2.0beta4 
--with-nc-config=/usr/local/netcdf-4.1.2beta/bin/nc-config 
--x-libraries=/usr/X11/lib --x-includes=/usr/X11/include

J.

On Aug 2, 2010, at 8:36 AM, John Helly wrote:

> Hi.
> 
> I copied all the source (netcdf-beta.tar and hdf5-1.8.5) to another mac and 
> upgraded Xcode and then installed the gfortran you specified and bingo.
> 
> +-------------------------------------------------------------+
> | Congratulations! You have successfully installed netCDF!    |
> |                                                             |
> | You can use script "nc-config" to find out the relevant     |
> | compiler options to build your application. Enter           |
> |                                                             |
> |     nc-config --help                                        |
> |                                                             |
> | for additional information.                                 |
> |                                                             |
> | CAUTION:                                                    |
> |                                                             |
> | If you have not already run "make check", then we strongly  |
> | recommend you do so. It does not take very long.            |
> |                                                             |
> | Before using netCDF to store important data, test your      |
> | build with "make check".                                    |
> |                                                             |
> | NetCDF is tested nightly on many platforms at Unidata       |
> | but your platform is probably different in some ways.       |
> |                                                             |
> | If any tests fail, please see the netCDF web site:          |
> | http://www.unidata.ucar.edu/software/netcdf/                |
> |                                                             |
> | NetCDF is developed and maintained at the Unidata Program   |
> | Center. Unidata provides a broad array of data and software |
> | tools for use in geoscience education and research.         |
> | http://www.unidata.ucar.edu                                 |
> +-------------------------------------------------------------+
> 
> iceberg:netcdf-4.1.2-beta1 hellyj$
> 
> Here's the script I used.  Note that this is a 64bit build since I turned off 
> the -m32 option.  At least I think it defaults to 64-bit.
> 
> #!/bin/bash
> make distclean
> #export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx32-static"
> #export 
> DYLD_LIBRARY_PATH=/usr/local/hdf5-1.8.5-macosx32-static:$DYLD_LIBRARY_PATH
> export DYLD_LIBRARY_PATH=/usr/local/hdf5-1.8.5:$DYLD_LIBRARY_PATH
> #export LD_LIBRARY_PATH=/usr/local/hdf5-1.8.5-macosx32-static:$LD_LIBRARY_PATH
> #
> echo "LD_LIBRARY_PATH: $LD_LIBRARY_PATH"
> echo "DYLD_LIBRARY_PATH:$DYLD_LIBRARY_PATH"
> export CC=/usr/bin/cc
> #export CFLAGS='-m32'
> #export CPPFLAGS=-Df2cFortran
> export F77=gfortran
> export FC=gfortran
> export FCFLAGS=-qsuffix=cpp=f90
> ./configure --prefix=/usr/local/netcdf-4.1.2beta --enable-netcdf-4 
> --enable-f90 --with-hdf5=/usr/local/hdf5-1.8.5
> 
> #./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 --enable-f90 
> --with-hdf5=/usr/local/hdf5-1.8.5-macosx32-static
> #
> #export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx64-static"
> #./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 --enable-f90 
> --with-hdf5=/usr/local/hdf5-1.8.5-macosx64-static
> 
> I'm going to try to reproduce this on my laptops where I was having the 
> previous problems.
> 
> Cheers.
> --------------
> John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of 
> Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 
> 760 840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) / 
> /www.sdsc.edu/~hellyj
> 
> 
> 
> 
> On Aug 2, 2010, at 8:20 AM, John Helly wrote:
> 
> Thanks, Roy.  Sounds like just the kind of black magic I need.
> Cheers.
> --------------
> John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of 
> Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 
> 760 840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) / 
> /www.sdsc.edu/~hellyj
> 
> 
> 
> 
> On Aug 2, 2010, at 7:52 AM, Roy Mendelssohn wrote:
> 
> Hi John:
> 
> I notice you are using HDF-1.8.5.  A few days ago I emailed the list about 
> that, and Ed replied that at the moment they do not work with HDF-1.8.5  (i 
> can't find the email but look at the archives).  You need to use the version 
> of HDF 1.8.4 that is on the netcdf ftp site.  I have been able to compile 
> that with:
> 
> 1.  the gcc and gfortran from fink
> 
> 2. the gcc from apple and the gfortran from R at:  
> http://r.research.att.com/tools/  - make certain you scroll down and get the 
> gfortran for Snwo Leopard, not the one at the top of the page.
> 
> HTH,
> 
> -Roy
> 
> 
> 
> 
>> Greetings.
>> 
>> I am struggling to compile netcdf-4.1.1 on OSX 10.6.4 with hdf5 and fortran 
>> so I can build Dave Pierce's new ncview.  I have worked my way through some 
>> earlier problems and have come to this script:
>> 
>> #!/bin/bash
>> make distclean
>> #export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx32-static"
>> export CC=/usr/bin/cc
>> export CFLAGS='-m32'
>> #export CPPFLAGS=-Df2cFortran
>> export F77=gfortran
>> export FC=gfortran
>> export FCFLAGS=-qsuffix=cpp=f90
>> ./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 --enable-f90 
>> --with-hdf5=/usr/local/hdf5-1.8.5-macosx32-static
>> #
>> #export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx64-static"
>> #./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 --enable-f90 
>> --with-hdf5=/usr/local/hdf5-1.8.5-macosx64-static
>> 
>> 
>> This got me past some earlier problems with 32-bit fortran libraries (I 
>> think) but now I'm getting complaints about the hdf5 libraries even though 
>> they seem to be found for some things.
>> 
>> checking for manual-page index command...
>> checking hdf5.h usability... yes
>> checking hdf5.h presence... yes
>> checking for hdf5.h... yes
>> checking whether we should try to build netCDF-4... yes
>> checking for H5Fflush in -lhdf5... no
>> configure: error: Can't find or link to the hdf5 library. Configure with 
>> --disable-netcdf-4 or see config.log for errors.
>> 
>> 
>> I'm attaching the config.log for those who might care to look.  In the 
>> script above, you can see that I experimented with defining the LDFLAGS and 
>> this solved the problem of the missing -lhdf5 but introduced a bunch of 
>> other even stranger problems that made me think I was overriding some more 
>> basic library paths by specifying LDFLAGS.  Anyway, I couldn't figure out 
>> what those problems were so I backed up to this in hoping that someone out 
>> there would have a suggestion.
>> 
>> Any help would be appreciated.
>> 
>> Cheers.
>> --------------
>> John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of 
>> Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 
>> 760 840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) / 
>> /www.sdsc.edu/~hellyj
>> <config.log>
>> 
>> _______________________________________________
>> netcdfgroup mailing list
>> netcdfgroup@xxxxxxxxxxxxxxxx
>> For list information or to unsubscribe,  visit: 
>> http://www.unidata.ucar.edu/mailing_lists/
> 
> **********************
> "The contents of this message do not reflect any position of the U.S. 
> Government or NOAA."
> **********************
> Roy Mendelssohn
> Supervisory Operations Research Analyst
> NOAA/NMFS
> Environmental Research Division
> Southwest Fisheries Science Center
> 1352 Lighthouse Avenue
> Pacific Grove, CA 93950-2097
> 
> e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address)
> voice: (831)-648-9029
> fax: (831)-648-8440
> www: http://www.pfeg.noaa.gov/
> 
> "Old age and treachery will overcome youth and skill."
> "From those who have been given much, much will be expected"
> 
> _______________________________________________
> netcdfgroup mailing list
> netcdfgroup@xxxxxxxxxxxxxxxx
> For list information or to unsubscribe,  visit: 
> http://www.unidata.ucar.edu/mailing_lists/
> 
> _______________________________________________
> netcdfgroup mailing list
> netcdfgroup@xxxxxxxxxxxxxxxx
> For list information or to unsubscribe,  visit: 
> http://www.unidata.ucar.edu/mailing_lists/
> 
> _______________________________________________
> netcdfgroup mailing list
> netcdfgroup@xxxxxxxxxxxxxxxx
> For list information or to unsubscribe,  visit: 
> http://www.unidata.ucar.edu/mailing_lists/

_______________________________________________
netcdfgroup mailing list
netcdfgroup@xxxxxxxxxxxxxxxx
For list information or to unsubscribe,  visit: 
http://www.unidata.ucar.edu/mailing_lists/



  • 2010 messages navigation, sorted by:
    1. Thread
    2. Subject
    3. Author
    4. Date
    5. ↑ Table Of Contents
  • Search the netcdfgroup archives: