Thanks, Roy. Sounds like just the kind of black magic I need.
Cheers.
--------------
John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of
Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 760
840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) /
/www.sdsc.edu/~hellyj
On Aug 2, 2010, at 7:52 AM, Roy Mendelssohn wrote:
Hi John:
I notice you are using HDF-1.8.5. A few days ago I emailed the list about
that, and Ed replied that at the moment they do not work with HDF-1.8.5 (i
can't find the email but look at the archives). You need to use the version of
HDF 1.8.4 that is on the netcdf ftp site. I have been able to compile that
with:
1. the gcc and gfortran from fink
2. the gcc from apple and the gfortran from R at:
http://r.research.att.com/tools/ - make certain you scroll down and get the
gfortran for Snwo Leopard, not the one at the top of the page.
HTH,
-Roy
> Greetings.
>
> I am struggling to compile netcdf-4.1.1 on OSX 10.6.4 with hdf5 and fortran
> so I can build Dave Pierce's new ncview. I have worked my way through some
> earlier problems and have come to this script:
>
> #!/bin/bash
>
>
> make distclean
>
>
> #export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx32-static"
>
>
> export CC=/usr/bin/cc
>
>
> export CFLAGS='-m32'
>
>
> #export CPPFLAGS=-Df2cFortran
>
>
> export F77=gfortran
>
>
> export FC=gfortran
>
>
> export FCFLAGS=-qsuffix=cpp=f90
>
>
> ./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 --enable-f90
> --with-hdf5=/usr/local/hdf5-1.8.5-macosx32-static
>
> #
>
>
> #export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx64-static"
>
>
> #./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 --enable-f90
> --with-hdf5=/usr/local/hdf5-1.8.5-macosx64-static
>
>
> This got me past some earlier problems with 32-bit fortran libraries (I
> think) but now I'm getting complaints about the hdf5 libraries even though
> they seem to be found for some things.
>
> checking for manual-page index command...
> checking hdf5.h usability... yes
> checking hdf5.h presence... yes
> checking for hdf5.h... yes
> checking whether we should try to build netCDF-4... yes
> checking for H5Fflush in -lhdf5... no
> configure: error: Can't find or link to the hdf5 library. Configure with
> --disable-netcdf-4 or see config.log for errors.
>
>
> I'm attaching the config.log for those who might care to look. In the script
> above, you can see that I experimented with defining the LDFLAGS and this
> solved the problem of the missing -lhdf5 but introduced a bunch of other even
> stranger problems that made me think I was overriding some more basic library
> paths by specifying LDFLAGS. Anyway, I couldn't figure out what those
> problems were so I backed up to this in hoping that someone out there would
> have a suggestion.
>
> Any help would be appreciated.
>
> Cheers.
> --------------
> John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of
> Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01
> 760 840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) /
> /www.sdsc.edu/~hellyj
> <config.log>
>
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**********************
"The contents of this message do not reflect any position of the U.S.
Government or NOAA."
**********************
Roy Mendelssohn
Supervisory Operations Research Analyst
NOAA/NMFS
Environmental Research Division
Southwest Fisheries Science Center
1352 Lighthouse Avenue
Pacific Grove, CA 93950-2097
e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address)
voice: (831)-648-9029
fax: (831)-648-8440
www: http://www.pfeg.noaa.gov/
"Old age and treachery will overcome youth and skill."
"From those who have been given much, much will be expected"
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