Re: [netcdfgroup] Is a failed test or not?

Yes, our testing occasionally deliberately tests for failures.
So you can ignore this error.

Marston Sheldon Johnston wrote:
Hi,


I ran make check om my Linux cluster (Redhat) with the following configuration:

./configure --prefix=/home/sm_marst/SOFTWARE --enable-separate-fortran --disable-shared --with-hdf5=/home/sm_marst/SOFTWARE --with-udunits --with-zlib=/usr/lib64 --enable-netcdf-4 --enable-docs-install --enable-extra-example-tests --enable-extra-tests CC=icc --enable-large-file-tests --with-temp-large=/nobackup/rossby14/sm_marst/tmp FC=ifort F77=ifort CXX=icpc
and I got the error below. What is strange is that the test says passed at the 
end. Is this what it's suppose to do?

Thanks,
/Marston


*** Testing HDF5/NetCDF-4 interoperability...
*** Creating a HDF5 file with one var with two dimension scales...ok.
*** Checking that HDF5 file can be read by netCDF-4, and adding an att...ok .
*** Checking that one var, two dimscales, one att file can still be read by 
HDF5...ok.
*** Creating a HDF5 file with one var and no dimension scales...ok.
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
  #000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
    major: Symbol table
    minor: Object not found
  #001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
    major: Symbol table
    minor: Object not found
  #002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
    major: Symbol table
    minor: Object not found
  #005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index 
to query
    major: Symbol table
    minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
  #000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
    major: Symbol table
    minor: Object not found
  #001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
    major: Symbol table
    minor: Object not found
  #002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
    major: Symbol table
    minor: Object not found
  #005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index 
to query
    major: Symbol table
    minor: Bad value
*** Creating a HDF5 file with one var and no dimension scales, without creation 
ordering...ok.
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
  #000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
    major: Symbol table
    minor: Object not found
  #001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
    major: Symbol table
    minor: Object not found
  #002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
    major: Symbol table
    minor: Object not found
  #005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index 
to query
    major: Symbol table
    minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
  #000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
    major: Symbol table
    minor: Object not found
  #001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
    major: Symbol table
    minor: Object not found
  #002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
    major: Symbol table
    minor: Object not found
  #005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index 
to query
    major: Symbol table
    minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
  #000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
    major: Symbol table
    minor: Object not found
  #001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
    major: Symbol table
    minor: Object not found
  #002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
    major: Symbol table
    minor: Object not found
  #005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index 
to query
    major: Symbol table
    minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
  #000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
    major: Symbol table
    minor: Object not found
  #001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
    major: Symbol table
    minor: Object not found
  #002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
    major: Symbol table
    minor: Object not found
  #005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index 
to query
    major: Symbol table
    minor: Bad value
*** Creating a HDF5 file with two vars and no dimension scales, without 
creation ordering...ok.
*** Creating a HDF5 file with fixed length string...ok.
*** Checking a HDF5 file with scalar, fixed-length string dataset...ok.
*** Tests successful!
PASS: tst_interops

- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
~ Marston S. Johnston                                   e-mail: 
marston@xxxxxxxxxxx  ~
~ Doctoral Student                                      Radio and Space Science 
        ~       
~ Chalmers Technical University                 http://www.chalmers.se          
    ~
~ Gothenburg Tel. (46) 31 772 2235 ~ ~ Sweden Skype ID marston.johnston ~
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


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