Hi,
I ran make check om my Linux cluster (Redhat) with the following configuration:
./configure --prefix=/home/sm_marst/SOFTWARE --enable-separate-fortran
--disable-shared --with-hdf5=/home/sm_marst/SOFTWARE --with-udunits
--with-zlib=/usr/lib64 --enable-netcdf-4 --enable-docs-install
--enable-extra-example-tests --enable-extra-tests CC=icc
--enable-large-file-tests --with-temp-large=/nobackup/rossby14/sm_marst/tmp
FC=ifort F77=ifort CXX=icpc
and I got the error below. What is strange is that the test says passed at the
end. Is this what it's suppose to do?
Thanks,
/Marston
*** Testing HDF5/NetCDF-4 interoperability...
*** Creating a HDF5 file with one var with two dimension scales...ok.
*** Checking that HDF5 file can be read by netCDF-4, and adding an att...ok .
*** Checking that one var, two dimscales, one att file can still be read by
HDF5...ok.
*** Creating a HDF5 file with one var and no dimension scales...ok.
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
#000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
major: Symbol table
minor: Object not found
#001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Can't move to next iterator location
#004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
major: Symbol table
minor: Object not found
#005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index
to query
major: Symbol table
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
#000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
major: Symbol table
minor: Object not found
#001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Can't move to next iterator location
#004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
major: Symbol table
minor: Object not found
#005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index
to query
major: Symbol table
minor: Bad value
*** Creating a HDF5 file with one var and no dimension scales, without creation
ordering...ok.
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
#000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
major: Symbol table
minor: Object not found
#001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Can't move to next iterator location
#004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
major: Symbol table
minor: Object not found
#005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index
to query
major: Symbol table
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
#000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
major: Symbol table
minor: Object not found
#001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Can't move to next iterator location
#004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
major: Symbol table
minor: Object not found
#005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index
to query
major: Symbol table
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
#000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
major: Symbol table
minor: Object not found
#001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Can't move to next iterator location
#004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
major: Symbol table
minor: Object not found
#005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index
to query
major: Symbol table
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
#000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
major: Symbol table
minor: Object not found
#001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Can't move to next iterator location
#004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
major: Symbol table
minor: Object not found
#005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index
to query
major: Symbol table
minor: Bad value
*** Creating a HDF5 file with two vars and no dimension scales, without
creation ordering...ok.
*** Creating a HDF5 file with fixed length string...ok.
*** Checking a HDF5 file with scalar, fixed-length string dataset...ok.
*** Tests successful!
PASS: tst_interops
-
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
~ Marston S. Johnston e-mail:
marston@xxxxxxxxxxx ~
~ Doctoral Student Radio and Space Science
~
~ Chalmers Technical University http://www.chalmers.se
~
~ Gothenburg Tel. (46) 31
772 2235 ~
~ Sweden Skype ID
marston.johnston ~
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
