[thredds] GDS 1.3 with GraDS1.94b

Hi All,

Trying to get a new GDS install going (GDS 1.3 with GraDS1.94b), but I cant 
startup GDS. I am getting the following console output error. Can anyone help 
me pin-point the configuration problem?

SP.


--------------------------------------------------------------------
Stephane Poirier, M.Sc. Optical Physics
Remote Sensing Application Software Developer
Geography Department, Burnside Hall
McGill University, Montreal, QC, Canada
http://geog.mcgill.ca
Stephane.Poirier2@xxxxxxxxx
Cell. (514) 994-3532
Fax: (514) 509-8833
--------------------------------------------------------------------
Stephane Poirier, M.Sc. Optical Physics
Remote Sensing Application Software Developer
3532 rue Sainte-Famille, Apt. 4
Montreal, QC, H2X 2L1, Canada
http://www.oifii.org
stephane.poirier@xxxxxxxxx
Tel.: (514) 509-8833
Fax: (514) 509-8833
--------------------------------------------------------------------
Tue Jul 27 09:47:27 EDT 2010: GrADS Data Server startup invoked...
Tue Jul 27 09:47:27 EDT 2010 ./bin/gds-respawn.sh: Starting GrADS Data Server 
(Tomcat 4.1)...
ANAGRAM_HOME = /opt/gds-1.3
  CATALINA_HOME_ = /opt/apache-tomcat-6.0.16
    CATALINA_BASE = /opt/apache-tomcat-6.0.16
  ANAGRAM_BASE = /opt/gds-1.3
    ANAGRAM_CONFIG = /opt/gds-1.3/gds.xml
    ANAGRAM_CONSOLE = /opt/gds-1.3/log/console.out
    ANAGRAM_TEMP = /opt/gds-1.3/temp
Tue Jul 27 09:47:27 EDT 2010: New PID for Tomcat: 27845
CMD = /usr/java/jdk1.6.0_05/bin/java -server -cp 
/opt/apache-tomcat-6.0.16/bin/bootstrap.jar -Djava.io.tmpdir=/opt/gds-1.3/temp 
-Danagram.home=/opt/gds-1.3 -Danagram.base=/opt/gds-1.3 
-Danagram.config=/opt/gds-1.3/gds.xml -Dcatalina.home=/opt/apache-tomcat-6.0.16 
-Dcatalina.base=/opt/apache-tomcat-6.0.16 org.apache.catalina.startup.Bootstrap 
start
Jul 27, 2010 9:47:28 AM org.apache.catalina.core.AprLifecycleListener init
INFO: The APR based Apache Tomcat Native library which allows optimal 
performance in production environments was not found on the java.library.path: 
/usr/java/jdk1.6.0_05/jre/lib/i386/server:/usr/java/jdk1.6.0_05/jre/lib/i386:/usr/java/jdk1.6.0_05/jre/../lib/i386:/usr/java/packages/lib/i386:/lib:/usr/lib
Jul 27, 2010 9:47:28 AM org.apache.coyote.http11.Http11Protocol init
SEVERE: Error initializing endpoint
java.net.BindException: Address already in use:8080
        at org.apache.tomcat.util.net.JIoEndpoint.init(JIoEndpoint.java:501)
        at org.apache.coyote.http11.Http11Protocol.init(Http11Protocol.java:176)
        at 
org.apache.catalina.connector.Connector.initialize(Connector.java:1058)
        at 
org.apache.catalina.core.StandardService.initialize(StandardService.java:677)
        at 
org.apache.catalina.core.StandardServer.initialize(StandardServer.java:795)
        at org.apache.catalina.startup.Catalina.load(Catalina.java:530)
        at org.apache.catalina.startup.Catalina.load(Catalina.java:550)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:597)
        at org.apache.catalina.startup.Bootstrap.load(Bootstrap.java:260)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:412)
Jul 27, 2010 9:47:28 AM org.apache.catalina.startup.Catalina load
SEVERE: Catalina.start
LifecycleException:  Protocol handler initialization failed: 
java.net.BindException: Address already in use:8080
        at 
org.apache.catalina.connector.Connector.initialize(Connector.java:1060)
        at 
org.apache.catalina.core.StandardService.initialize(StandardService.java:677)
        at 
org.apache.catalina.core.StandardServer.initialize(StandardServer.java:795)
        at org.apache.catalina.startup.Catalina.load(Catalina.java:530)
        at org.apache.catalina.startup.Catalina.load(Catalina.java:550)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:597)
        at org.apache.catalina.startup.Bootstrap.load(Bootstrap.java:260)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:412)
Jul 27, 2010 9:47:28 AM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 456 ms
Jul 27, 2010 9:47:28 AM org.apache.catalina.core.StandardService start
INFO: Starting service Catalina
Jul 27, 2010 9:47:28 AM org.apache.catalina.core.StandardEngine start
INFO: Starting Servlet Engine: Apache Tomcat/6.0.16
Jul 27, 2010 9:47:28 AM org.apache.catalina.core.StandardContext 
addApplicationListener
INFO: The listener "org.springframework.web.context.ContextLoaderListener" is 
already configured for this context. The duplicate definition has been ignored.
Jul 27, 2010 9:47:28 AM org.apache.catalina.core.StandardContext 
addApplicationListener
INFO: The listener "thredds.server.config.TdsConfigContextListener" is already 
configured for this context. The duplicate definition has been ignored.
Jul 27, 2010 9:47:28 AM org.apache.catalina.core.StandardContext 
addApplicationListener
INFO: The listener "thredds.server.opendap.OpendapSessionAttributeListener" is 
already configured for this context. The duplicate definition has been ignored.
log4j:WARN No appenders could be found for logger 
(org.springframework.util.ClassUtils).
log4j:WARN Please initialize the log4j system properly.
Jul 27, 2010 9:47:28 AM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring root WebApplicationContext
TdsConfigContextListener.contextInitialized(): start.
Jul 27, 2010 9:47:29 AM org.apache.catalina.core.ApplicationContext log
INFO: Initializing log4j from 
[/opt/apache-tomcat-6.0.16/webapps/thredds/WEB-INF/log4j.xml]
Jul 27, 2010 9:47:30 AM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring FrameworkServlet 'root'
Jul 27, 2010 9:47:30 AM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring FrameworkServlet 'catalogService'
Jul 27, 2010 9:47:30 AM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring FrameworkServlet 'catalogGen'
Jul 27, 2010 9:47:30 AM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring FrameworkServlet 'dqc'
Jul 27, 2010 9:47:30 AM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring FrameworkServlet 'cdmRemote'
Jul 27, 2010 9:47:30 AM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring FrameworkServlet 'admin'
Jul 27, 2010 9:47:31 AM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring FrameworkServlet 'wms'
Jul 27, 2010 9:47:31 AM org.apache.catalina.core.StandardContext 
addApplicationListener
INFO: The listener "listeners.ContextListener" is already configured for this 
context. The duplicate definition has been ignored.
Jul 27, 2010 9:47:31 AM org.apache.catalina.core.StandardContext 
addApplicationListener
INFO: The listener "listeners.SessionListener" is already configured for this 
context. The duplicate definition has been ignored.
Jul 27, 2010 9:47:31 AM org.apache.catalina.core.ApplicationContext log
INFO: ContextListener: contextInitialized()
Jul 27, 2010 9:47:31 AM org.apache.catalina.core.ApplicationContext log
INFO: SessionListener: contextInitialized()
Jul 27, 2010 9:47:31 AM org.apache.coyote.http11.Http11Protocol start
SEVERE: Error starting endpoint
java.net.BindException: Address already in use:8080
        at org.apache.tomcat.util.net.JIoEndpoint.init(JIoEndpoint.java:501)
        at org.apache.tomcat.util.net.JIoEndpoint.start(JIoEndpoint.java:515)
        at 
org.apache.coyote.http11.Http11Protocol.start(Http11Protocol.java:203)
        at org.apache.catalina.connector.Connector.start(Connector.java:1131)
        at 
org.apache.catalina.core.StandardService.start(StandardService.java:531)
        at 
org.apache.catalina.core.StandardServer.start(StandardServer.java:710)
        at org.apache.catalina.startup.Catalina.start(Catalina.java:578)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:597)
        at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:288)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:413)
Jul 27, 2010 9:47:31 AM org.apache.catalina.startup.Catalina start
SEVERE: Catalina.start: 
LifecycleException:  service.getName(): "Catalina";  Protocol handler start 
failed: java.net.BindException: Address already in use:8080
        at org.apache.catalina.connector.Connector.start(Connector.java:1138)
        at 
org.apache.catalina.core.StandardService.start(StandardService.java:531)
        at 
org.apache.catalina.core.StandardServer.start(StandardServer.java:710)
        at org.apache.catalina.startup.Catalina.start(Catalina.java:578)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:597)
        at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:288)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:413)
Jul 27, 2010 9:47:31 AM org.apache.catalina.startup.Catalina start
INFO: Server startup in 3350 ms
Jul 27, 2010 9:47:31 AM org.apache.catalina.core.StandardServer await
SEVERE: StandardServer.await: create[8005]: 
java.net.BindException: Address already in use
        at java.net.PlainSocketImpl.socketBind(Native Method)
        at java.net.PlainSocketImpl.bind(PlainSocketImpl.java:359)
        at java.net.ServerSocket.bind(ServerSocket.java:319)
        at java.net.ServerSocket.<init>(ServerSocket.java:185)
        at 
org.apache.catalina.core.StandardServer.await(StandardServer.java:373)
        at org.apache.catalina.startup.Catalina.await(Catalina.java:642)
        at org.apache.catalina.startup.Catalina.start(Catalina.java:602)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:597)
        at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:288)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:413)
log4j:ERROR LogMananger.repositorySelector was null likely due to error in 
class reloading, using NOPLoggerRepository.
Tue Jul 27 09:47:33 EDT 2010 ./bin/gds-respawn.sh: Tomcat process exited
Tue Jul 27 09:47:33 EDT 2010 ./bin/gds-respawn.sh: GrADS Data Server failed to 
start. Server may be misconfigured, or already running.
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