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Hi, following from my unsuccessful attempts to use a prebuilt netcdf module, I'm trying to build netcdf myself. I have built hdf5-1.10.1 parallel, with Intel compiler 16.0.2 + Intel MPI library. All hdf5 tests pass: http://cgpack.sourceforge.net/201705/hdf5-1.10.1-make-check.log I configured netcdf-c-4.4.1.1 with CC=mpiicc \ CPPFLAGS=-I/panfs/panasas01/mech/mexas/soft/hdf5-1.10.1-ifort16u2-install/include \ LDFLAGS=-L/panfs/panasas01/mech/mexas/soft/hdf5-1.10.1-ifort16u2-install/lib \ ./configure --prefix=/panfs/panasas01/mech/mexas/soft/netcdf-c-4.4.1.1-ifort-install \ --enable-shared --enable-parallel-tests --enable-fortran --enable-netcdf-4 which gave me: # NetCDF C Configuration Summary ============================== # General ------- NetCDF Version: 4.4.1.1 Configured On: Thu May 18 15:32:00 BST 2017 Host System: x86_64-unknown-linux-gnu Build Directory: /panfs/panasas01/mech/mexas/soft/netcdf-c-4.4.1.1 Install Prefix: /panfs/panasas01/mech/mexas/soft/netcdf-c-4.4.1.1-ifort-install # Compiling Options ----------------- C Compiler: /cm/shared/languages/Intel-Compiler-XE-16-U2/compilers_and_libraries_2016.2.181/linux/mpi/intel64/bin/mpiicc CFLAGS: CPPFLAGS: -I/panfs/panasas01/mech/mexas/soft/hdf5-1.10.1-ifort16u2-install/include LDFLAGS: -L/panfs/panasas01/mech/mexas/soft/hdf5-1.10.1-ifort16u2-install/lib AM_CFLAGS: AM_CPPFLAGS: AM_LDFLAGS: Shared Library: yes Static Library: yes Extra libraries: -lhdf5_hl -lhdf5 -ldl -lm -lcurl # Features -------- NetCDF-2 API: yes HDF4 Support: no NetCDF-4 API: yes NC-4 Parallel Support: yes PNetCDF Support: no DAP Support: yes Diskless Support: yes MMap Support: no JNA Support: no Does this look ok? Then make run fine, i.e. no errors. Then make check fails with this error: make[2]: `tst_h_dimscales4' is up to date. depbase=`echo tst_h_par.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpiicc -DHAVE_CONFIG_H -I. -I.. -I../include -I../oc2 -I/panfs/panasas01/mech/mexas/soft/hdf5-1.10.1-ifort16u2-install/include -MT tst_h_par.o -MD -MP -MF $depbase.Tpo -c -o tst_h_par.o tst_h_par.c &&\ mv -f $depbase.Tpo $depbase.Po tst_h_par.c(89): error: identifier "ERR" is undefined if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR; ^ tst_h_par.c(226): error: identifier "SUMMARIZE_ERR" is undefined SUMMARIZE_ERR; ^ tst_h_par.c(231): error: identifier "FINAL_RESULTS" is undefined FINAL_RESULTS; ^ compilation aborted for tst_h_par.c (code 2) make[2]: *** [tst_h_par.o] Error 2 make[2]: Leaving directory `/panfs/panasas01/mech/mexas/soft/netcdf-c-4.4.1.1/h5_test' Have I configured netcdf wrongly? Thanks Anton
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