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Hi all,I am using netcdf within the BioFormats project [1]. I am trying to read a dataset (generated with HDF5) with properties:
No. of Dimensions: 1 Dimensions Size: 663 Max dimension size: Unlimited Data Type: String, length = variable Chunking: 55 Compression: GZIP: level 4, Storage level allocation time: IncrementalWhen I want to read the data I get following error. If the same dataset is not GZIP compressed, it works...
java.lang.IllegalStateException at ucar.nc2.iosp.IospHelper.readData(IospHelper.java:396) at ucar.nc2.iosp.IospHelper.readDataFill(IospHelper.java:292) at ucar.nc2.iosp.hdf5.H5iosp.readData(H5iosp.java:163) at ucar.nc2.iosp.hdf5.H5iosp.readData(H5iosp.java:141) at ucar.nc2.NetcdfFile.readData(NetcdfFile.java:1957) at ucar.nc2.Variable.reallyRead(Variable.java:841) at ucar.nc2.Variable._read(Variable.java:813) at ucar.nc2.Variable.read(Variable.java:691)at loci.formats.services.NetCDFServiceImpl.getArray(NetCDFServiceImpl.java:168) at loci.formats.services.NetCDFServiceImpl.getVariableValue(NetCDFServiceImpl.java:150)
at loci.formats.in.CellH5Reader.parseROIs(CellH5Reader.java:453) Is reading of VLen data + Compression possible with NetCDF? Thanks a lot! Cheers, Christoph[1] http://www.openmicroscopy.org/site/support/bio-formats5/developers/java-library.html
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