Due to the current gap in continued funding from the U.S. National Science Foundation (NSF), the NSF Unidata Program Center has temporarily paused most operations. See NSF Unidata Pause in Most Operations for details.
Due to the current gap in continued funding from the U.S. National Science Foundation (NSF), the NSF Unidata Program Center has temporarily paused most operations. See NSF Unidata Pause in Most Operations for details.
Hello Stefan, Thanks for the corrections for the CMake instructions; that is very helpful!I have also identified several issues when building netcdf with pnetcdf support
using CMake based on your questions.In the short term, using the autotools-based configure script may be your best bet. Using the latest developer snapshot, I'm able to build with pnetcdf support
on our parallel test machine. Would you mind sending the config.log and output from your build attempt with the configure script to support-netcdf@xxxxxxxxxxxxxxxx? I'd like to take a look at them to see if we can figure out why it is failing to detect your libraries. Thanks! -Ward wfisher@xxxxxxxxxxxxxxxx On 8/26/13 7:21 AM, Stefan Mauerberger wrote:
Hello there, first of all, building serial netCDF on Ubuntu 12.10 works fine. Therefore I installed the packages libhdf5-dev and libhdf5-7 1.8.8-9. All tests pass through. Well, in INSTALL.cmake lines 72 and 90 are wrong. They should better read as cmake ./ -DCMAKE_INSTALL_PREFIX=$HOME/local ... instead of ./cmake In addition between lines 72-73 and 90-91 a 'make' is missing. In contrast to serial netCDF, I can not build netCDF with parallel I/O support. Both CMake and ./configure complain that there is no hdf5.h header file. Let me explain first what I have done so far. The packages libhdf5-dev and libhdf5-7 got replaced by there MPI counterparts. That are libhdf5-openmpi-dev and libhdf5-openmpi-7 also version 1.8.8-9. After that I tried to run CC=mpicc.openmpi cmake . -DENABLE_PARALLEL=ON -DCMAKE_INSTALL_PREFIX=$HOME/local/ Unfortunately the output is:.... -- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "7.27.0") CMake Error at CMakeLists.txt:572 (CHECK_LIBRARY_EXISTS): CHECK_LIBRARY_EXISTS Macro invoked with incorrect arguments for macro named: CHECK_LIBRARY_EXISTS CMake Error at CMakeLists.txt:576 (CHECK_LIBRARY_EXISTS): CHECK_LIBRARY_EXISTS Macro invoked with incorrect arguments for macro named: CHECK_LIBRARY_EXISTS -- Cannot find HDF5 library built with parallel support. Disabling parallel build. -- Looking for math.h -- Looking for math.h - found ....Well, HDF5 with parallel IO support is installed. Why doesn't cmake (2.8.9) as well as the configure script find it? Any ideas? Actually, there is again a mistake in the INSTALL.cmake. Line 119 by accident has '..' instead of './'. In addition the 'make' command is missing between lines 119 and 120. Cheers and thanks in advance, Stefan Btw. I previously built netCDF 4.2.1.1 successfully on precisely that environment and machine. _______________________________________________ netcdfgroup mailing list netcdfgroup@xxxxxxxxxxxxxxxx For list information or to unsubscribe, visit: http://www.unidata.ucar.edu/mailing_lists/
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