[netcdfgroup] installing netCDF with --enable-hdf4

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• Subject: [netcdfgroup] installing netCDF with --enable-hdf4
• From: Charlie Zender <zender@xxxxxxx>
• Date: Wed, 20 Mar 2013 08:46:22 -0700

Hi netCDFers,

I'm trying to install netCDF with the optional HDF4 support.
Is there a site that illustrates the procedure?
I'm closer than before, stymied by a linking error.
A summary of my attempt follows.

Any help appreciated,
cz

I build and install HDF5, then HDF4, then (attempt to build) netCDF4:

# HDF5 ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4/hdf5-1.8.9.tar.gz
./configure --prefix=/usr/local --enable-cxx --enable-fortran
make;sudo make install
# HDF4 http://www.hdfgroup.org/ftp/HDF/HDF_Current/src/hdf-4.2.9.tar.gz
./configure --prefix=/usr/local --enable-fortran
make;sudo make install
# netCDF4
LDFLAGS='-L/usr/local/lib' ./configure --prefix=/usr/local
--enable-shared --enable-dap --enable-hdf4 --enable-logging
--enable-netcdf4 --enable-v2
make

The steps above all work fine with the simple change to --disable-hdf4.
With --enable-hdf4 the netCDF make command fails in the ncgen3 section:

Making check in libsrc4
make[1]: entrant dans le répertoire «
/data/zender/tmp/netcdf-4.3.0-rc3/libsrc4 »
make[1]: Rien à faire pour « check ».
make[1]: quittant le répertoire «
/data/zender/tmp/netcdf-4.3.0-rc3/libsrc4 »
Making check in libdap2
make[1]: entrant dans le répertoire «
/data/zender/tmp/netcdf-4.3.0-rc3/libdap2 »
make[1]: Rien à faire pour « check ».
make[1]: quittant le répertoire «
/data/zender/tmp/netcdf-4.3.0-rc3/libdap2 »
Making check in liblib
make[1]: entrant dans le répertoire «
/data/zender/tmp/netcdf-4.3.0-rc3/liblib »
make[1]: Rien à faire pour « check ».
make[1]: quittant le répertoire « /data/zender/tmp/netcdf-4.3.0-rc3/liblib »
make[1]: Rien à faire pour « check ».
make[1]: entrant dans le répertoire «
/data/zender/tmp/netcdf-4.3.0-rc3/ncgen3 »
/bin/bash ../libtool --tag=CC   --mode=link gcc  -fPIC -m64
-L/usr/local/lib -o ncgen3 main.o load.o escapes.o getfill.o init.o
genlib.o ncgentab.o ../liblib/libnetcdf.la  -lhdf5_hl -lhdf5 -lm -lz -lcurl
libtool: link: gcc -fPIC -m64 -o .libs/ncgen3 main.o load.o escapes.o
getfill.o init.o genlib.o ncgentab.o  -L/usr/local/lib
../liblib/.libs/libnetcdf.so /usr/local/lib/libhdf5_hl.so
/usr/local/lib/libhdf5.so -lm -lz
/usr/lib/x86_64-linux-gnu/libcurl-gnutls.so
../liblib/.libs/libnetcdf.so: undefined reference to `SDstart'
../liblib/.libs/libnetcdf.so: undefined reference to `SDend'
../liblib/.libs/libnetcdf.so: undefined reference to `SDattrinfo'
../liblib/.libs/libnetcdf.so: undefined reference to `SDfileinfo'
../liblib/.libs/libnetcdf.so: undefined reference to `SDreadattr'
../liblib/.libs/libnetcdf.so: undefined reference to `SDselect'
../liblib/.libs/libnetcdf.so: undefined reference to `SDreaddata'
../liblib/.libs/libnetcdf.so: undefined reference to `SDdiminfo'
../liblib/.libs/libnetcdf.so: undefined reference to `SDgetfillvalue'
../liblib/.libs/libnetcdf.so: undefined reference to `SDgetinfo'
../liblib/.libs/libnetcdf.so: undefined reference to `SDgetdimid'
collect2: error: ld returned 1 exit status
make[1]: *** [ncgen3] Erreur 1
make[1]: quittant le répertoire « /data/zender/tmp/netcdf-4.3.0-rc3/ncgen3 »
make: *** [check-recursive] Erreur 1

-- 
Charlie Zender, Earth System Sci. & Computer Sci.
University of California, Irvine 949-891-2429 )'(

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  • Re: [netcdfgroup] installing netCDF with --enable-hdf4
    • From: Lynnes, Christopher S. (GSFC-6102)