Due to the current gap in continued funding from the U.S. National Science Foundation (NSF), the NSF Unidata Program Center has temporarily paused most operations. See NSF Unidata Pause in Most Operations for details.
Due to the current gap in continued funding from the U.S. National Science Foundation (NSF), the NSF Unidata Program Center has temporarily paused most operations. See NSF Unidata Pause in Most Operations for details.
Just for the record, I had the same problem when I tried to build 4.1.2 on several different systems (Linux and MacOS), and I do have HDF5, szip, zlib, etc all in the same bin, include, lib directories. In my case, I edited the "./configure" program to force LIBS to include "-lsz", and that seemed to fix the problem. Setting the LIBS env var probably would have worked too. --Mary On May 6, 2011, at 4:20 PM, Chad Herman wrote: > On 05/06/2011 06:01 PM, Ed Hartnett wrote: >> Chad Herman<chad.herman.us@xxxxxxxxx> writes: >> >>> I fixed the problem by defining some environmental variables: >>> >>> export CPPFLAGS="-fPIC -I/usr/local/zlib-1.2.5/include >>> -I/usr/local/szip-2.1/include -I/usr/local/hdf5-1.8.6/include" >>> export LDFLAGS="-L/usr/local/zlib-1.2.5/lib -L/usr/local/szip-2.1/lib >>> -L/usr/local/netcdf-4.1.2/lib -lnetcdff -lnetcdf >>> -L/usr/local/hdf5-1.8.6/lib -lhdf5_hl -lhdf5 >>> -L/usr/local/zlib-1.2.5/lib -lz -lm -lhdf5_hl -lhdf5 -lz -lm -lsz >>> -L/usr/local/szip-2.1/lib -lsz -lhdf5_hl -lhdf5 -lz -lm >>> -lsz-L/usr/local/hdf5-1.8.6/lib" >>> export LIBS="-lm -lsz" >>> >>> Now I can get through configure and build. The only issue I have left, >>> which admittedly is an aesthetic annoyance, is that nc-config returns >>> repeated library paths and names: >>> >>> -L/usr/local/netcdf-4.1.2/lib -lnetcdf -L/usr/local/hdf5-1.8.6/lib >>> -lhdf5_hl -lhdf5 -L/usr/local/zlib-1.2.5/lib -lz -lm -lhdf5_hl -lhdf5 >>> -lz -lm -lsz -L/usr/local/szip-2.1/lib -lsz -lhdf5_hl -lhdf5 -lz -lm >>> -lsz -L/usr/local/hdf5-1.8.6/lib -lhdf5_hl -lhdf5 >>> -L/usr/local/zlib-1.2.5/lib -lz -L/usr/local/szip-2.1/lib -lsz >>> >>> This is undoubtedly because of LDFLAGS and LIBS variables. Is there a >>> way to successfully build with out having to define LDFLAGS and LIBS? >>> >> >> The way to avoid all that is to install the latest version of each >> library in the same directory, and use only that. >> >> Thanks, >> >> Ed >> > > I used to keep all of my libraries in /usr/local, but at some point, the > include and lib folders became unmanageable. I want to keep the library > directories separate. > > Chad > > _______________________________________________ > netcdfgroup mailing list > netcdfgroup@xxxxxxxxxxxxxxxx > For list information or to unsubscribe, visit: > http://www.unidata.ucar.edu/mailing_lists/
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