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If you don’t want/need HDF5 support, you can just install netcdf disabling its support, say ./configure –disable-netcdf4 –disable-hdf5 Here I got an issue about netcdf activating HDF5 automatically although the version is not compatible (netcdf 4.1.1 assumes –disable-netcdf4 and –disable-hdf5 if no HDF5 is found on the libraries’ path). Then I just forced it via the above command and it compiled fine. Later, when I need to test the HDF5/netcdf4 stuff, I will install and link to the latest HDF5 library. I hope it helps.
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