Due to the current gap in continued funding from the U.S. National Science Foundation (NSF), the NSF Unidata Program Center has temporarily paused most operations. See NSF Unidata Pause in Most Operations for details.
Due to the current gap in continued funding from the U.S. National Science Foundation (NSF), the NSF Unidata Program Center has temporarily paused most operations. See NSF Unidata Pause in Most Operations for details.
In converting a program from netcdf2 to netcdf4, I have encountered an error in the nf90_open. It returns -36 which nf90_strerror says is "Invalid argument". The 3 arguments certainly look valid, so perhaps this is an installation issue. I want to install netcdf4/hdf5 into their own directory and want to leave other versions of netcdf4 and hdf5 untouched. I suspect that libtool is the culprit here and is insisting that netcdf4 link to another version of hdf5. In any case, I'd appreciate any hints to install an isolated netcdf4/hdf5 and comments on my configure scripts: To install hdf5 on an x86_64 machine, I set FC=/usr/bin/f95 and did ./configure --with-szlib=/usr/local/lib --enable-fortran --prefix=/foo I then installed hdf4.1.1 keeping FC defined as above and did ./configure --with-hdf5=/foo --prefix=/foo --enable-netcdf4 --with-zlib=/usr/local --with-szlib=/usr/local This build fails on linking ncgen3 with the following: /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -L/exports/glusterfs/hdf5-1.8.5-patch1/lib -L/usr/local/lib -L/usr/local/lib -L/usr/kerberos/lib64 -lcurl -ldl -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err -lidn -lssl -lcrypto -lz -o ncgen3 main.o load.o escapes.o getfill.o init.o genlib.o ncgentab.o ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lz -lm libtool: link: gcc -g -O2 -o ncgen3 main.o load.o escapes.o getfill.o init.o genlib.o ncgentab.o -L/foo/lib -L/usr/local/lib -L/usr/kerberos/lib64 ../libsrc4/.libs/libnetcdf.a -L/usr/local/TOOLKIT5.2.15/szip/linux64/szip-2.1/lib -lcurl -ldl -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err -lidn -lssl -lcrypto /usr/local/TOOLKIT5.2.15/hdf5/linux64/hdf5-1.6.7/lib/libhdf5_hl.so /usr/lib64/.libs/libhdf5.so /usr/local/TOOLKIT5.2.16_gcc4.1.2_fix/szip/linux64/szip-2.1/lib/libsz.a /exports/glusterfs/hdf5-1.8.5-patch1/lib/libhdf5_hl.so -L/usr/local/lib/lib /foo/lib/libhdf5.so /usr/local/lib/libsz.so -lz -lm -Wl,-rpath -Wl,/usr/local/TOOLKIT5.2.15/hdf5/linux64/hdf5-1.6.7/lib -Wl,-rpath -Wl,/usr/lib64/.libs -Wl,-rpath -Wl,/foo/lib -Wl,-rpath -Wl,/usr/local/TOOLKIT5.2.15/hdf5/linux64/hdf5-1.6.7/lib -Wl,-rpath -Wl,/exports/glusterfs/hdf5-1.8.5-patch1/lib gcc: /usr/local/TOOLKIT5.2.15/hdf5/linux64/hdf5-1.6.7/lib/libhdf5_hl.so: No such file or directory gcc: /usr/lib64/.libs/libhdf5.so: No such file or directory
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