Due to the current gap in continued funding from the U.S. National Science Foundation (NSF), the NSF Unidata Program Center has temporarily paused most operations. See NSF Unidata Pause in Most Operations for details.
Due to the current gap in continued funding from the U.S. National Science Foundation (NSF), the NSF Unidata Program Center has temporarily paused most operations. See NSF Unidata Pause in Most Operations for details.
try adding "-fno-second-underscore" to the FORTRAN options. At 11:04 AM -0800 2/3/10, Joe Buck wrote:
Richard,I've tried to set the compilers to use mpif77, mpif90 and mpicc. I do not believe I have the pgi compilers installed. I'm working with ubuntu 9.4 with pretty standard compilers (gfortran, f2c, gcc, g++) installed.I'm attaching the nm output.Thanks for the help Richard. I'm going to try some of Ed's suggestions next and I'll report back if there's any change in status.Regards, -Joe BuckOn Wed, Feb 3, 2010 at 10:25 AM, Richard Hedges <<mailto:richard-hedges@xxxxxxxx>richard-hedges@xxxxxxxx> wrote:Howdy Joe,It looks like something like this has been encountered when trying to compile with the PGI compilers:<http://*www.*unidata.ucar.edu/support/help/MailArchives/netcdf/msg0164>http://*www.*unidata.ucar.edu/support/help/MailArchives/netcdf/msg01641.htmlThere is some discussion of the thread re. the procedure naming conventions for FORTRAN that may be at the heart of the problem.Do you know what the underlying compilers are? What do you get from "nm .../libnetcdf.a |grep nf_" go slugs! - Richard At 12:26 AM -0800 2/3/10, Joe Buck wrote:I've built mpi2 v 1.2.1 with these flags:CFLAGS="-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC" ./configure --enable-f90 --enable-f77 --with-mpe --with-romio --prefix=/install/mpich2-121I then build hdf5 v1.8 with these flags:FC=mpif90 F77=mpif77 F90=mpif90 CC=mpicc CFLAGS="-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC" LIBS="-lz -lm" ./configure --enable-parallel --enable-fortran --prefix=/install/hdf5-1.8 --disable-sharedand everything with hdf5 checked out with "make check" Finally I configured netcdf v4.0.1 like so:buck@bender:/tmp/netcdf-4.0.1$ CPPFLAGS="-I/install/mpich2-121/include -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC" CFLAGS="-I/install/mpich2-121/include -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC" F77=mpif77 F90=mpif90 FC=mpif90 CC=mpicc CXX=mpicxx LIBS="-lz -lm" ./configure --enable-netcdf-4 --prefix=/install/netcdf-4.0.1 --enable-large-file-tests --with-hdf5=/install/hdf5-1.8 --with-zlib=/usr --enable-separate-fortranmake works just fine but when I run "make check" I get errors when it tries to build fortran files that start like this: /bin/sh ../libtool --tag=F77 --mode=link mpif77 -I../fortran -I/install/hdf5-1.8/include -I/usr/include -I../libsrc4 -I../f90 -g -L/lib -L/install/hdf5-1.8/lib -L/usr/lib -o nf_test test_get.o test_put.o nf_error.o nf_test.o test_read.o test_write.o util.o fortlib.o ../fortran/<http://**libnetcdff.la>libnetcdff.la -lm ../libsrc4/<http://**libnetcdf.la>libnetcdf.la -lhdf5_hl -lhdf5 -lz -lm libtool: link: mpif77 -I../fortran -I/install/hdf5-1.8/include -I/usr/include -I../libsrc4 -I../f90 -g -o nf_test test_get.o test_put.o nf_error.o nf_test.o test_read.o test_write.o util.o fortlib.o -L/lib -L/install/hdf5-1.8/lib -L/usr/lib ../fortran/.libs/libnetcdff.a /tmp/netcdf-4.0.1/libsrc4/.libs/libnetcdf.a ../libsrc4/.libs/libnetcdf.a /install/hdf5-1.8/lib/libhdf5_hl.a /install/hdf5-1.8/lib/libhdf5.a -lz -lmtest_get.o: In function `test_nf_get_var1_text':/tmp/netcdf-4.0.1/nf_test/test_get.F:25: undefined reference to `nf_open_'/tmp/netcdf-4.0.1/nf_test/test_get.F:34: undefined reference to `nf_get_var1_text_' /tmp/netcdf-4.0.1/nf_test/test_get.F:38: undefined reference to `nf_get_var1_text_'.... I'm attaching the entire results.Any ideas would be appreciated. I've tried playing with flags for a while and can't quite seem to get this ironed out.Thanks, -Joe Buck Content-Type: text/plain; charset=US-ASCII; name="mc2.txt" Content-Disposition: attachment; filename="mc2.txt" X-Attachment-Id: f_g57utkpj0 Attachment converted: Macintosh HD:mc2.txt (TEXT/MSWD) (01CF155F) _______________________________________________ netcdfgroup mailing list <mailto:netcdfgroup@xxxxxxxxxxxxxxxx>netcdfgroup@xxxxxxxxxxxxxxxxFor list information or to unsubscribe, visit: http://**www.**<http://*unidata.ucar.edu/mailing_lists/>unidata.ucar.edu/mailing_lists/-- ==================================================== Richard Hedges Customer Support and Test - File Systems Project Development Environment Group - Livermore Computing Lawrence Livermore National Laboratory 7000 East Avenue, MS L-557 Livermore, CA 94551 v: (925) 423-2699 f: (925) 423-6961 E: <mailto:richard-hedges@xxxxxxxx>richard-hedges@xxxxxxxx Content-Type: text/plain; charset=US-ASCII; name="nm.txt" Content-Disposition: attachment; filename="nm.txt" X-Attachment-Id: f_g58hl96t0 Attachment converted: Macintosh HD:nm.txt (TEXT/MSWD) (01CF2801)
-- ==================================================== Richard Hedges Customer Support and Test - File Systems Project Development Environment Group - Livermore Computing Lawrence Livermore National Laboratory 7000 East Avenue, MS L-557 Livermore, CA 94551 v: (925) 423-2699 f: (925) 423-6961 E: richard-hedges@xxxxxxxx
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