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Hello,I have a problem: NetCDF 4.0.1 adds the following lines to netcdf.h (HDF5 is, in fact, built without parallel I/O support.):
===/* These defs added by netCDF configure because parallel HDF5 is not present. */
#define MPI_Comm int #define MPI_Info int #define MPI_COMM_WORLD 0 #define MPI_INFO_NULL 0 ===This (it seems to me) makes it impossible to use MPI (or PETSc) with NetCDF, producing warnings like
=== /opt/local/include/netcdf.h:43:1: warning: "MPI_COMM_WORLD" redefinedIn file included from /Users/constantine/Documents/PISM/petsc-3.0.0-p0/ include/petsc.h:137, from /Users/constantine/Documents/PISM/petsc-3.0.0- p0/include/petscis.h:7, from /Users/constantine/Documents/PISM/petsc-3.0.0- p0/include/petscvec.h:9, from /Users/constantine/Documents/PISM/petsc-3.0.0- p0/include/petscda.h:7,
from ../src/base/grid.cc:20: === and errors similar to ===../src/base/grid.cc:64: error: invalid conversion from ‘int’ to ‘ompi_communicator_t*’
===NetCDF 4.0.1 built without --enable-netcdf-4 works fine with the same code.
Please let me know if this is the intended behavior, if I'm doing something wrong, etc.
Thank you! -- Constantine Khroulev PISM (www.pism-docs.org) Developer/Maintainer University of Alaska Fairbanks
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