Re: [netcdfgroup] test_varm3 compile error

• To: Orion Poplawski <orion@xxxxxxxxxxxxx>
• Subject: Re: [netcdfgroup] test_varm3 compile error
• From: Dennis Heimbigner <dmh@xxxxxxxxxxxxxxxx>
• Date: Mon, 28 Sep 2009 16:54:27 -0600

Two things:
1. your configure needs to specify the --with-hdf5=...
   and --with-zlib=... and with --with-hdf4=...
2. You are correct about the -lmfhdf, it should have been added
   by the --enable-hdf4, but wasn't; my error.

Should be fixed in tonights snapshot.

=Dennis Heimbigner

Orion Poplawski wrote:

make[3]: Entering directory `/builddir/build/BUILD/netcdf-4.1-beta2-snapshot2009092800/ncdap_test'

depbase=`echo test_varm3.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\

cc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../ncdump -I../libsrc4 -I/usr/include/hdf -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT test_varm3.o -MD -MP -MF $depbase.Tpo -c -o test_varm3.o test_varm3.c &&\

    mv -f $depbase.Tpo $depbase.Po

/bin/sh ../libtool --tag=CC --mode=link cc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -L../libsrc4 -L/usr/lib64/hdf -o test_varm3 test_varm3.o ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 libtool: link: cc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o .libs/test_varm3 test_varm3.o -L/builddir/build/BUILD/netcdf-4.1-beta2-snapshot2009092800/libsrc4 -L/usr/lib64/hdf ../libsrc4/.libs/libnetcdf.so -L/usr/lib -L/lib -lcurl -lhdf5_hl -lhdf5 -Wl,-rpath -Wl,/usr/lib64

../libsrc4/.libs/libnetcdf.so: undefined reference to `SDend'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDfileinfo'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDdiminfo'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDgetfillvalue'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDgetinfo'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDselect'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDgetdimid'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDstart'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDreaddata'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDreadattr'
../libsrc4/.libs/libnetcdf.so: undefined reference to `SDattrinfo'
collect2: ld returned 1 exit status

Configure args are:

+ ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --target=x86_64-redhat-linux-gnu --program-prefix= --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info CPPFLAGS=-I/usr/include/hdf LDFLAGS=-L/usr/lib64/hdf --enable-shared --enable-netcdf-4 --enable-dap --enable-hdf4 --enable-ncgen4 --enable-extra-example-tests --enable-valgrind-tests --with-libcf

Presumably this shouldn't be compiled in this configuration? Or hdf needs to be compiled differently? Or this needs to be linked to -lmfhdf? Or?

Thanks!

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    • From: Orion Poplawski