Due to the current gap in continued funding from the U.S. National Science Foundation (NSF), the NSF Unidata Program Center has temporarily paused most operations. See NSF Unidata Pause in Most Operations for details.
Due to the current gap in continued funding from the U.S. National Science Foundation (NSF), the NSF Unidata Program Center has temporarily paused most operations. See NSF Unidata Pause in Most Operations for details.
On Wed, Sep 02, 2009 at 05:11:10PM -0400, Carlos Moffat wrote: > Ok, I tried this: > > FC=mpif90 CC=mpicc CPPFLAGS="-DpgiFortran" LIBS="-lm -lz -lhdf5" > ./configure --enable-netcdf-4 --prefix=/usr/local > > > and now fails with (so it goes a bit farther): > > mpif90 -DHAVE_CONFIG_H -I. -I.. -I../fortran -DpgiFortran -I../fortran > -I../libsrc4 -I../f90 -g -c -o ftst_vars.o ftst_vars.F > mpif90 -I../fortran -I../libsrc4 -I../f90 -g -c -o handle_err.o > handle_err.f > /bin/bash ../libtool --tag=F77 --mode=link mpif90 -I../fortran > -I../libsrc4 -I../f90 -g -o ftst_vars ftst_vars.o fortlib.o > handle_err.o ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm -lz > -lhdf5 -L/usr/local/bin/mpif90 > libtool: link: mpif90 -I../fortran -I../libsrc4 -I../f90 -g -o ftst_vars > ftst_vars.o fortlib.o handle_err.o ../libsrc4/.libs/libnetcdf.a > -L/usr/local/bin/mpif90 -lhdf5_hl -lm -lz -lhdf5 > ftst_vars.o: In function `ftst_vars': > /home/cmoffat/Sandbox/netcdf-4.0.1/nf_test/ftst_vars.F:57: undefined > reference to `nf_set_chunk_cache_' all of your undefined references are fortran symbols with a trailing underscore. this is a common yet irritating problem with fortran compilers. Unfortunately the easiest way to fix this is to ensure that you build netcdf4, mpich2, and HDF5 with the same fortran compiler. If you do an 'mpif90 -show', do you see 'gfortran' or 'ifort' as the compiler being used? The -DpgiFortran looks odd to me but since I rarely build the netcdf4 fortran interfaces, maybe that's just the way to do it. ==rob -- Rob Latham Mathematics and Computer Science Division Argonne National Lab, IL USA
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