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Due to the current gap in continued funding from the U.S. National Science Foundation (NSF), the NSF Unidata Program Center has temporarily paused most operations. See NSF Unidata Pause in Most Operations for details.
Hi,I have been struggling to compile (F90) my model for the last couple of days without any success. I don't know much about compiling and netcdf stuff, so I am hoping someone will help me with that.
I installed the netcdf binaries in my home directory and I have included the path in my Makefile as follows:
# Netcdf NETCDFINC = /home/penguin/rafael/netcdf-3.6.2/include NETCDFLIB = /home/penguin/rafael/netcdf-3.6.2/lib # Includes and Links # ------------------------------------------------------------------------- INCLUDES = -I$(NETCDFINC)LINKS = -L$(NETCDFLIB) -lnetcdf -L$(LALIB) -llapack -lblas -lpgmp -lpthread
I am using Portland FORTRAN pgf90 to compile the code. I get the following message every time I try to compile it: _________________________________________________________________________pgf90 -v -fast -Minform=inform -L/home/penguin/rafael/netcdf-3.6.2/lib -lnetcdf -L/usr/local/pgi/linux86/6.1/lib -llapack -lblas -lpgmp -lpthread kinds.o physical_parameters.o eau_params.o sib_const_module.o sib_io_module.o sib_bc_module.o sibtype.o timetype.o addinc.o balan.o dtess_eau.o begtem.o cfrax.o clm_combo.o combine_snow.o compact_snow.o cycalc.o delef.o delhf.o dellwf.o hydro_canopy.o hydro_snow.o hydro_soil.o qsat_eau.o ess_eau.o netrad.o phosib.o rada2.o rbrd.o respsib.o rnload.o soilwater.o sortin.o subdivide_snow.o tridiag_solver.o vmfcalz.o vmfcalzo.o vntlat.o sibslv.o update.o resp_control.o sib.o handle_err.o init_grid.o init_var.o zenith.o init_sibdrv.o time_init.o time_manager.o sibdrv_read_single.o sibdrv_read_ecmwf.o sibdrv_read_ncep2.o sibdrv_read_geos4.o read_ti.o mapper.o calculate_td.o read_ndvi.o previous_bc.o rtape_sib.o diagnostic_output.o pbpwrite.o qpwrite.o output_control.o sibdrv_interp.o bc_interp.o SiBDRV.o -o SiBD3
/usr/bin/ld /usr/lib/crt1.o /usr/lib/crti.o /usr/lib/gcc-lib/i386-redhat-linux/3.3.3//crtbegin.o /usr/local/pgi/linux86/6.1/lib/f90main.o -m elf_i386 -dynamic-linker /lib/ld-linux.so.2 /usr/local/pgi/linux86/6.1/lib/pgi.ld -L/home/penguin/rafael/netcdf-3.6.2/lib -lnetcdf -L/usr/local/pgi/linux86/6.1/lib -llapack -lblas -lpgmp -lpthread kinds.o physical_parameters.o eau_params.o sib_const_module.o sib_io_module.o sib_bc_module.o sibtype.o timetype.o addinc.o balan.o dtess_eau.o begtem.o cfrax.o clm_combo.o combine_snow.o compact_snow.o cycalc.o delef.o delhf.o dellwf.o hydro_canopy.o hydro_snow.o hydro_soil.o qsat_eau.o ess_eau.o netrad.o phosib.o rada2.o rbrd.o respsib.o rnload.o soilwater.o sortin.o subdivide_snow.o tridiag_solver.o vmfcalz.o vmfcalzo.o vntlat.o sibslv.o update.o resp_control.o sib.o handle_err.o init_grid.o init_var.o zenith.o init_sibdrv.o time_init.o time_manager.o sibdrv_read_single.o sibdrv_read_ecmwf.o sibdrv_read_ncep2.o sibdrv_read_geos4.o read_ti.o mapper.o calculate_td.o read_ndvi.o previous_bc.o rtape_sib.o diagnostic_output.o pbpwrite.o qpwrite.o output_control.o sibdrv_interp.o bc_interp.o SiBDRV.o -o SiBD3 -L/usr/local/pgi/linux86/6.1/lib -L/usr/lib -L/usr/lib/gcc-lib/i386-redhat-linux/3.3.3/ -rpath /usr/local/pgi/linux86/6.1/lib -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lpgsse1 -lc -lnspgc -lpgc -lm -lgcc -lc -lgcc /usr/lib/gcc-lib/i386-redhat-linux/3.3.3//crtend.o /usr/lib/crtn.o
sibslv.o(.text+0xad0): In function `sibslv_': : undefined reference to `dgesv_' handle_err.o(.text+0xcb): In function `handle_err_': : undefined reference to `nf90_strerror_' init_grid.o(.text+0x1f4b): In function `init_grid_': : undefined reference to `nf90_open_' . . . [the list of 'undefined reference' extends infinitely up to the point below] . . . cleaning up after signal(2)... gmake: *** Deleting file `SiBD3' gmake: *** [SiBD3] Error 127 _______________________________________________________________________I apologize if this is something really simple to solve but I hope some of you could give me a hint on how to solve this problem. I am happy to provide any additional information as required.
Thank you, Rafael
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