Due to the current gap in continued funding from the U.S. National Science Foundation (NSF), the NSF Unidata Program Center has temporarily paused most operations. See NSF Unidata Pause in Most Operations for details.
Due to the current gap in continued funding from the U.S. National Science Foundation (NSF), the NSF Unidata Program Center has temporarily paused most operations. See NSF Unidata Pause in Most Operations for details.
I am again trying to use netcdf modules instead of netcdfAll.
I need to use modules because you have stopped producing netcdfAll for new
versions.
I am using the new v5.5.3.
I included the cdm-zarr module in my pom.xml file because I would like to
try it someday and because I want to include as many file-read options as
possible.
I checked: cdm-zarr-5.5.3.jar is in my /lib directory after Maven builds
the project.
mvn compile throws no errors.
mvn dependency:analyze throws no errors and says I'm not missing
dependencies, but that I have a few unreferenced classes (several are
netcdf-related).
Now, when I run my unit tests (which previously worked), this code
String fileName = "/u00/data/viirs/MappedMonthly4km/m4.ncml";
NetcdfFile nc = NetcdfDatasets.openDataset(fileName);
throws this exception:
Exception in thread "main" java.lang.NullPointerException: Cannot invoke
"String.contains(java.lang.CharSequence)" because "location" is null
at
thredds.inventory.zarr.MFileZip$Provider.canProvide(MFileZip.java:200)
at thredds.inventory.MFiles.create(MFiles.java:37)
at ucar.nc2.internal.ncml.AggDataset.<init>(AggDataset.java:74)
at
ucar.nc2.internal.ncml.Aggregation.makeDataset(Aggregation.java:453)
at
ucar.nc2.internal.ncml.Aggregation.addExplicitDataset(Aggregation.java:136)
at ucar.nc2.internal.ncml.NcmlReader.readAgg(NcmlReader.java:1476)
at ucar.nc2.internal.ncml.NcmlReader.readNetcdf(NcmlReader.java:521)
at ucar.nc2.internal.ncml.NcmlReader.readNcml(NcmlReader.java:478)
at ucar.nc2.internal.ncml.NcmlReader.readNcml(NcmlReader.java:397)
at
ucar.nc2.internal.ncml.NcmlNetcdfFileProvider.open(NcmlNetcdfFileProvider.java:24)
at
ucar.nc2.dataset.NetcdfDatasets.openProtocolOrFile(NetcdfDatasets.java:431)
at
ucar.nc2.dataset.NetcdfDatasets.openDataset(NetcdfDatasets.java:152)
at
ucar.nc2.dataset.NetcdfDatasets.openDataset(NetcdfDatasets.java:135)
at
ucar.nc2.dataset.NetcdfDatasets.openDataset(NetcdfDatasets.java:118)
at
ucar.nc2.dataset.NetcdfDatasets.openDataset(NetcdfDatasets.java:104)
even though the file is an .ncml file (attached) which references 2 hdf
files
V20120012012031.L3m_MO_NPP_CHL_chlor_a_4km
V20120322012060.L3m_MO_NPP_CHL_chlor_a_4km
which are pretty big, but you can download from
https://coastwatch.pfeg.noaa.gov/erddap/files/testMediaFiles/ProbablyDoNotWork/
The error message isn't helpful.
Why am I getting this error message even though there are no Zarr files
involved?
Or, do you have a pom.xml which includes what used to be in netcdfAll?
Perhaps I am missing some low level artifact.
My pom.xml is attached if that is helpful.
Thank you for looking into this.
Attachment:
m4.ncml
Description: Binary data
<?xml version="1.0" encoding="UTF-8"?>
<!--
This is how Bob uses Maven for ERDDAP.
Maven users will probably be mystified/horrified,
but it works for me and does what I need it to do:
identify and gather all needed .jar dependencies
since this is impossible for AWS S3 dependencies without Maven.
* One time: Make a new Maven project/archetype:
cd \programs\mavenERDDAP
mvn -B archetype:generate -DgroupId=gov.noaa.pfel.erddap -DartifactId=ERDDAP
-DarchetypeArtifactId=maven-archetype-quickstart -DarchetypeVersion=1.4
* Copy Java source files from Tomcat/webapps/cwexperimental to Maven:
With bash:
cd /c/content/bat
./synchToMaven.sh
* Update ERDDAP version number below in ...
<version>2.19-SNAPSHOT</version>
* Update the version numbers starting with <plugins> section.
Website to search for maven plugins and dependencies:
https://mvnrepository.com/
* Compile in Maven and gather dependency .jar files
(pom.xml based on Kyle's pom from
https://github.com/axiom-data-science/erddap )
From DOS command line (or Bash) (after synchToMaven.sh has copied source
files to Maven dir):
//mvn -help
//add -e for full error messages
//add -X for debug messages
cd \programs\mavenERDDAP\ERDDAP //that's where pom.xml is
set "JAVA_HOME=C:\programs\jdk-17.0.3+7"
mvn clean //removes previously generated .class files and
...
mvn compile //uses javac. Identifies missing
dependencies/.jars.
mvn dependency:analyze //Identifies excess or missing dependencies/.jars.
// Expected:
// WARNINGS for netcdf-java -related edu.ucar
classes.
// WARNINGS for Cassandra dependencies:
// slf4j, guava, lz4, metrics, netty, snappy.
mvn package //Creates a war in
\programs\mavenERDDAP\ERDDAP\target
(then copy netcdfAll-x.x.x.jar into /lib)
or: mvn clean install -U //clears out cached information (more thoroughly
than 'clean') and does it all?
* Temporarily rename tomcat/webapps/cwexperimental/WEB-INF/lib to today's date:
/libYYYYMMDD
* Move all .jar files
from inside
C:\programs\mavenERDDAP\ERDDAP\target\ERDDAP-...-SNAPSHOT\WEB-INF\lib directory
to tomcat/webapps/cwexperimental/WEB-INF/lib
The vast majority of .jars are from the AWS S3 dependency.
* Run TestAll. If passes all tests, delete temporary libYYYYMMDD directory.
-->
<project xmlns="http://maven.apache.org/POM/4.0.0";
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/xsd/maven-4.0.0.xsd";>
<modelVersion>4.0.0</modelVersion>
<groupId>gov.noaa.pfel.erddap</groupId>
<artifactId>ERDDAP</artifactId>
<version>2.19-SNAPSHOT</version>
<packaging>war</packaging>
<name>erddap</name>
<url>https://coastwatch.pfeg.noaa.gov/erddap/index.html</url>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
<repositories>
<!-- Published advice:
https://docs.unidata.ucar.edu/netcdf-java/current/userguide/using_netcdf_java_artifacts.html
Repository
https://artifacts.unidata.ucar.edu/repository/unidata-all (on web page)
or
https://artifacts.unidata.ucar.edu/repository/unidata-releases (privately)
Browse either https://artifacts.unidata.ucar.edu/#browse/browse
-->
<repository>
<id>unidata-all</id>
<name>UNIDATA All</name>
<url>https://artifacts.unidata.ucar.edu/repository/unidata-all/</url>
</repository>
</repositories>
<build>
<resources>
<resource>
<directory>src/main/java</directory>
<includes>
<include>**/*.properties</include>
<include>**/*.csv</include>
<include>**/*.tsv</include>
<include>**/*.txt</include>
<include>**/*.cpt</include>
<include>**/*.xml</include>
</includes>
</resource>
</resources>
<plugins>
<plugin>
<!--
https://mvnrepository.com/artifact/org.apache.maven.plugins/maven-compiler-plugin
-->
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.10.1</version>
<configuration>
<failOnError>true</failOnError>
<source>17</source> <!-- java version -->
<target>17</target>
<excludes>
<exclude>gov/noaa/pfel/coastwatch/sgt/LandMask.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/sgt/MapGraph.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/sgt/MapProj.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/sgt/GSHHSNewOnHold.java_NOT_YET</exclude>
<exclude>gov/noaa/pfel/coastwatch/griddata/Grd.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/griddata/GridDataSetCWOpendap.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/griddata/GridDataSetPathfinder.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/griddata/WriteShapefile.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/pointdata/DigirIobisTDSP.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/pointdata/DigirObisTDSP.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/hdf/HdfWriter.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/HelloWorld.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromBinaryFile.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromMatFiles.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableCopyPost.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromBMDE.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromMWFS.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromNOS.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromNcSequenceFiles.javaNOT_FINISHED</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromNWISDV.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromPostDatabase.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromPostNcFiles.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/util/FileVisitorDNLS.javaOLD</exclude>
</excludes>
</configuration>
</plugin>
<!--
https://mvnrepository.com/artifact/org.apache.maven.plugins/maven-war-plugin -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>3.3.2</version>
</plugin>
<!-- ??? 2022-07-06 5.5.3 does have netcdfAll. WHAT IS
REPLACEMENT???
https://mvnrepository.com/artifact/com.googlecode.maven-download-plugin/download-maven-plugin
This approach is from Jennifer Oxelson. See
https://github.com/oxelson/netcdfAll/blob/main/pom.xml
I think this isn't needed/doesn't work(?).
Instead, just download netcdfAll
from
https://artifacts.unidata.ucar.edu/#browse/browse:downloads-netcdf-java
to c:/programs/mavenERDDAP/ERDDAP/external_libs/
- ->
<plugin>
<groupId>com.googlecode.maven-download-plugin</groupId>
<artifactId>download-maven-plugin</artifactId>
<version>1.6.8</version>
<executions>
<execution>
<phase>validate</phase>
<goals>
<goal>wget</goal>
</goals>
<configuration>
<url>https://artifacts.unidata.ucar.edu/repository/downloads-netcdf-java/5.5.2/netcdfAll-5.5.2.jar</url>
<outputFileName>netcdfAll-5.5.2.jar</outputFileName>
<outputDirectory>${project.basedir}/external_libs</outputDirectory>
</configuration>
</execution>
</executions>
</plugin> -->
</plugins>
<pluginManagement>
<plugins>
<!--
https://mvnrepository.com/artifact/org.apache.maven.plugins/maven-resources-plugin
-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>3.2.0</version>
</plugin>
<!--
https://mvnrepository.com/artifact/org.apache.maven.plugins/maven-dependency-plugin
-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>3.3.0</version>
</plugin>
<!--
https://mvnrepository.com/artifact/org.apache.maven.plugins/maven-surefire-plugin
-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.22.2</version>
</plugin>
<!--
https://mvnrepository.com/artifact/org.apache.maven.plugins/surefire-junit4 -->
<plugin>
<groupId>org.apache.maven.surefire</groupId>
<artifactId>surefire-junit4</artifactId>
<version>2.19.1</version>
</plugin>
<!--
https://mvnrepository.com/artifact/org.codehaus.plexus/plexus-utils -->
<plugin>
<groupId>org.codehaus.plexus</groupId>
<artifactId>plexus-utils</artifactId>
<version>3.4.2</version>
</plugin>
</plugins>
</pluginManagement>
</build>
<dependencyManagement>
<dependencies>
<!-- https://mvnrepository.com/artifact/software.amazon.awssdk/bom
Parent for reading/writing to AWS S3. -->
<dependency>
<groupId>software.amazon.awssdk</groupId>
<artifactId>bom</artifactId>
<version>2.17.224</version> <!-- and same number several places
below -->
<type>pom</type>
<scope>import</scope>
</dependency>
</dependencies>
</dependencyManagement>
<dependencies>
<!--
https://mvnrepository.com/artifact/jakarta.servlet/jakarta.servlet-api -->
<dependency>
<groupId>jakarta.servlet</groupId>
<artifactId>jakarta.servlet-api</artifactId>
<version>6.0.0</version>
<scope>provided</scope>
<!-- Tomcat8 needed this. Tomcat10 doesn't allow it.
<configuration>
<port>8081</port>
<path>/erddap</path>
</configuration -->
</dependency>
<!-- https://mvnrepository.com/artifact/junit/junit
There are newer versions with different domain name, but cause
trouble with dependency checking.
For testing (by Kyle? Maven?). -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.2</version>
<scope>test</scope>
</dependency>
<!-- Kyle had this:
https://mvnrepository.com/artifact/org.apache.ant/ant
<dependency>
<groupId>org.apache.ant</groupId>
<artifactId>ant</artifactId>
<version>1.10.9</version>
</dependency> -->
<!-- https://mvnrepository.com/artifact/gnu-regexp/gnu-regexp
This is needed for dods.dap code I wasn't compiling but Maven
does.
'provided' lets it compile here but then doesn't include the .jar
in /lib in .war.
-->
<dependency>
<groupId>gnu-regexp</groupId>
<artifactId>gnu-regexp</artifactId>
<version>1.1.4</version>
<scope>provided</scope>
</dependency>
<!-- https://mvnrepository.com/artifact/gnu.getopt/java-getopt
This is needed for dods.dap code I wasn't compiling but Maven
does.
'provided' lets it compile here but then doesn't include the .jar
in /lib in .war.
-->
<dependency>
<groupId>gnu.getopt</groupId>
<artifactId>java-getopt</artifactId>
<version>1.0.13</version>
<scope>provided</scope>
</dependency>
<!-- https://mvnrepository.com/artifact/com.lowagie/itext
This is the pdf writer.
Newer version is available, but license now gpl! So stick to 1.3.1
-->
<dependency>
<groupId>com.lowagie</groupId>
<artifactId>itext</artifactId>
<version>1.3.1</version>
</dependency>
<!-- Kyle had this:
<dependency>
<groupId>wsdl4j</groupId>
<artifactId>wsdl4j</artifactId>
<version>1.6.3</version>
</dependency-->
<!-- https://mvnrepository.com/artifact/org.apache.lucene/lucene-core
The Lucene search option uses this.
2021-12-16 WARNING: Lucene 9.0.0 is available but requires Java
11(?). -->
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-core</artifactId>
<version>9.2.0</version>
</dependency>
<!--
https://mvnrepository.com/artifact/org.apache.lucene/lucene-queryparser
The Lucene search option uses this. -->
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-queryparser</artifactId>
<version>9.2.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.json/json
This is the JSON reader. -->
<dependency>
<groupId>org.json</groupId>
<artifactId>json</artifactId>
<version>20220320</version>
</dependency>
<!-- I have private copy of source code in with my code.
2020-12-21 I tried to remove my copy and use this, but failed.
https://mvnrepository.com/artifact/org.jdom/jdom
<dependency>
<groupId>org.jdom</groupId>
<artifactId>jdom</artifactId>
<version>2.0.2</version>
</dependency-->
<!-- Kyle had this:
<dependency>
<groupId>org.apache.axis</groupId>
<artifactId>axis</artifactId>
<version>1.4</version>
</dependency-->
<!-- Kyle had this:
<dependency>
<groupId>atg.taglib.json</groupId>
<artifactId>json-taglib</artifactId>
<version>0.4.1</version>
</dependency-->
<!-- https://mvnrepository.com/artifact/com.sun.mail/jakarta.mail
Used to send emails. -->
<dependency>
<groupId>com.sun.mail</groupId>
<artifactId>jakarta.mail</artifactId>
<version>2.0.1</version>
</dependency>
<!-- versions:
https://mvnrepository.com/artifact/commons-codec/commons-codec
dependency:analyze says it's needed. -->
<dependency>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
<version>1.15</version>
</dependency>
<!--
https://mvnrepository.com/artifact/org.apache.commons/commons-compress
File2 and EDDTableFromNcFiles use this. -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-compress</artifactId>
<version>1.21</version>
</dependency>
<!-- https://mvnrepository.com/artifact/commons-logging/commons-logging
dependency:analyze says it's needed.
Maven says 1.2's dependencies have 4 vulnerabilities, but all are
old log4j vulnerabilities,
so ERDDAP admins shouldn't use old log4j (or any log4j). -->
<dependency>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
<version>1.2</version>
</dependency>
<!-- https://mvnrepository.com/artifact/jaxen/jaxen
org.jdom.xpath code uses this. -->
<dependency>
<groupId>jaxen</groupId>
<artifactId>jaxen</artifactId>
<version>1.2.0</version>
</dependency>
<!-- Published advice
https://docs.unidata.ucar.edu/netcdf-java/current/userguide/using_netcdf_java_artifacts.html
and Jan 24, 2022 email from Jennifer Oxelson Ganter
and a set of runtime modules from
https://docs.unidata.ucar.edu/netcdf-java/current/userguide/file_types.html
To figure out which module has a given class, Google, e.g.: github
netcdf-java ucar nc2 geotiff GeotiffWriter
Browse repository (probably unidata-all):
https://artifacts.unidata.ucar.edu/#browse/browse
-->
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fbufr
-->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>bufr</artifactId>
<version>5.5.3</version> <!-- this number duplicated many times
below -->
<scope>runtime</scope>
</dependency>
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fcdm-core
Fundamental!
Has ucar.nc2.Variable and Variable.Builder (and other builders).
Has ucar.nc2.ncml.NcmlReader, Aggregation, AggregationExisting,
AggregationFmrc, AggregationOuterDimension,
AggregationUnion, etc-->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-core</artifactId>
<version>5.5.3</version>
<scope>compile</scope>
</dependency>
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fcdm-image
-->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-image</artifactId>
<version>5.5.3</version>
<scope>runtime</scope>
</dependency>
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fcdm-mcidas
-->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-mcidas</artifactId>
<version>5.5.3</version>
<scope>runtime</scope>
</dependency>
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fcdm-misc
Has ucar.nc2.geotiff. -->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-misc</artifactId>
<version>5.5.3</version>
<scope>compile</scope>
</dependency>
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fcdm-radial
probably not needed-->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-radial</artifactId>
<version>5.5.3</version>
<scope>runtime</scope>
</dependency>
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fcdm-vis5d
-->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-vis5d</artifactId>
<version>5.5.3</version>
<scope>runtime</scope>
</dependency>
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fcdm-zarr
-->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-zarr</artifactId>
<version>5.5.3</version>
<scope>runtime</scope>
</dependency>
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fclcommon
Referenced in Jennifer's email. Has ucar.nc2.dt.image... and some
ucar.nc2.iosp...
But I distrust artifacts with version=5.1.0. - ->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>clcommon</artifactId>
<version>5.1.0</version>
<scope>compile</scope>
</dependency> -->
<!-- d4* is probably dap4: not needed -->
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fgrib
-->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>grib</artifactId>
<version>5.5.3</version>
<scope>runtime</scope>
</dependency>
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fhttpservices
-->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>httpservices</artifactId>
<version>5.5.3</version>
<scope>compile</scope>
</dependency>
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Flegacy
-->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>legacy</artifactId>
<version>5.5.3</version>
<scope>compile</scope>
</dependency>
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fnetcdf
doesn't have 5.x -->
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fnetcdf-java
doesn't have 5.5.3+ -->
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fnetcdf4
This is for writing netcdf4 files with linked C library. -->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>netcdf4</artifactId>
<version>5.5.3</version>
<scope>runtime</scope>
</dependency>
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fopendap
-->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>opendap</artifactId>
<version>5.5.3</version>
<scope>compile</scope>
</dependency>
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fudunits
Marked as needed by dependency:analyze -->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>udunits</artifactId>
<version>5.5.3</version>
<scope>compile</scope>
</dependency>
<!-- Version options:
https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fwisc%2Fssec%2Fvisad
Marked as needed by dependency:analyze -->
<dependency>
<groupId>edu.wisc.ssec</groupId>
<artifactId>visad</artifactId>
<version>2.0-20191209</version>
<scope>runtime</scope>
</dependency>
<!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-simple
2021-12-21: I think it is needed.
WAS: NO LONGER NEEDED! It's in netcdf-all.jar
and something else gets slf4j-api-...jar -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-simple</artifactId>
<version>1.7.36</version>
<scope>runtime</scope>
</dependency>
<!--
https://mvnrepository.com/artifact/org.apache.commons/commons-jexl3
This is the expression parser/processor used by EDDTableFromFiles
Derived Variables. -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-jexl3</artifactId>
<version>3.2.1</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.postgresql/postgresql
Postgresql users use this. I include for their convenience. -->
<dependency>
<groupId>org.postgresql</groupId>
<artifactId>postgresql</artifactId>
<version>42.4.0</version>
</dependency>
<!-- CASSANDRA
https://mvnrepository.com/artifact/com.datastax.cassandra/cassandra-driver-core
Cassandra uses this. -->
<dependency>
<groupId>com.datastax.cassandra</groupId>
<artifactId>cassandra-driver-core</artifactId>
<version>3.11.2</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.google.guava/guava
Cassandra driver uses this. -->
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>31.1-jre</version>
</dependency>
<!-- https://mvnrepository.com/artifact/net.jpountz.lz4/lz4
Cassandra uses this. C* still refers to this older version from
older domain. -->
<dependency>
<groupId>net.jpountz.lz4</groupId>
<artifactId>lz4</artifactId>
<version>1.3.0</version>
</dependency>
<!--
https://mvnrepository.com/artifact/io.dropwizard.metrics/metrics-core
Cassandra uses this. -->
<dependency>
<groupId>io.dropwizard.metrics</groupId>
<artifactId>metrics-core</artifactId>
<version>4.2.10</version>
</dependency>
<!-- https://mvnrepository.com/artifact/io.netty/netty-all
Cassandra uses this. -->
<dependency>
<groupId>io.netty</groupId>
<artifactId>netty-all</artifactId>
<version>4.1.78.Final</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.xerial.snappy/snappy-java
Cassandra uses this. -->
<dependency>
<groupId>org.xerial.snappy</groupId>
<artifactId>snappy-java</artifactId>
<version>1.1.8.4</version>
</dependency>
<!--
https://mvnrepository.com/artifact/io.dropwizard.metrics/metrics-jmx
2021-01-25 Tried: To deal with java.lang.NoClassDefFoundError:
com/codahale/metrics/JmxReporter
But now "metrics" option is always set to false.
See EDDTableFromCassandra references to JmxReporter.
See
https://docs.datastax.com/en/developer/java-driver/3.5/manual/metrics/#metrics-4-compatibility
and need for Cluster.builder().withoutJMXReporting()
which is probably a workable solution.
<dependency>
<groupId>io.dropwizard.metrics</groupId>
<artifactId>metrics-jmx</artifactId>
<version>4.2.5</version>
</dependency -->
<!-- AWS
https://mvnrepository.com/artifact/software.amazon.awssdk/s3
This is the core AWS SDK code.
See awssdk/bom in <dependencyManagement> section above. -->
<dependency>
<groupId>software.amazon.awssdk</groupId>
<artifactId>s3</artifactId>
<version>2.17.224</version>
</dependency>
<!-- https://mvnrepository.com/artifact/software.amazon.awssdk/regions
This is the AWS code for Regions. -->
<dependency>
<groupId>software.amazon.awssdk</groupId>
<artifactId>regions</artifactId>
<version>2.17.224</version>
</dependency>
<!--
https://mvnrepository.com/artifact/software.amazon.awssdk/s3-transfer-manager
This is the AWS code for TransferManager. -->
<dependency>
<groupId>software.amazon.awssdk</groupId>
<artifactId>s3-transfer-manager</artifactId>
<version>2.17.224-PREVIEW</version>
</dependency>
<!--
https://mvnrepository.com/artifact/com.google.cloud/google-cloud-translate -->
<!-- Added by Qi for translation purpose -->
<!-- WARNING:
2022-02-07 2.1.10 caused a timeout error. Revert to 2.1.7 again.
2021-12-22 2.1.8 caused: Exception in thread
"grpc-default-executor-0" java.lang.NoSuchMethodError:
com.google.protobuf.GeneratedMessageV3.isStringEmpty(Ljava/lang/Object;)Z
so revert to 2.1.7 for now -->
<dependency>
<groupId>com.google.cloud</groupId>
<artifactId>google-cloud-translate</artifactId>
<version>2.3.0</version>
</dependency>
<!--
https://mvnrepository.com/artifact/com.google.api.grpc/proto-google-cloud-translate-v3
-->
<!-- Added by Bob for translation project -->
<!-- WARNING:
2022-02-07 2.1.10 caused a timeout error. Revert to 2.1.7 again.
2021-12-22 2.1.8 caused: Exception in thread
"grpc-default-executor-0" java.lang.NoSuchMethodError:
com.google.protobuf.GeneratedMessageV3.isStringEmpty(Ljava/lang/Object;)Z
so revert to 2.1.7 for now -->
<dependency>
<groupId>com.google.api.grpc</groupId>
<artifactId>proto-google-cloud-translate-v3</artifactId>
<version>2.3.0</version>
</dependency>
<!--
https://mvnrepository.com/artifact/com.google.auth/google-auth-library-oauth2-http
-->
<dependency>
<groupId>com.google.auth</groupId>
<artifactId>google-auth-library-oauth2-http</artifactId>
<version>1.8.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.google.api/gax -->
<dependency>
<groupId>com.google.api</groupId>
<artifactId>gax</artifactId>
<version>2.18.3</version>
</dependency>
</dependencies>
</project>
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