Re: [gembud] Gempak-7.4.5.deb installation

All,
Well...a little more analysis and search gave me some bad news. I found a Csh 
script with nice details on the different applications and the variable 
pointing to the directory I had found. ÂThere is a lot missing.
Shall I post the make.out file here?
Paul


Sent from my Sprint Samsung Galaxy S7.
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-->-------- Original message --------From: "Paul H. Lewis" <phldml3@xxxxxxx> 
Date: 12/19/18  10:57 PM  (GMT-06:00) To: 'gembud' <gembud@xxxxxxxxxxxxxxxx> 
Subject: Re: [gembud] Gempak-7.4.5.deb installation 
All,ÂWell I have somewhat good news. It looks like I might have compiled the 
source successfully. At least the system didnât crash.ÂOne tutorial stated I 
should be able to run gdplot from the command line. But I get an error when I 
try that, stating that gdplot canât be found. I havenât found gdplot in the 
directory structure yet, but I have found other apps like alist (I think that 
was it!). Anyway, I think maybe my problem is that paths and environmental 
variables may be off.ÂDoes that sound reasonable?ÂPaulÂÂFrom: Tyle, Kevin R 
[mailto:ktyle@xxxxxxxxxx] 
Sent: Wednesday, December 19, 2018 4:02 PM
To: Paul H. Lewis <phldml3@xxxxxxx>
Cc: 'gembud' <gembud@xxxxxxxxxxxxxxxx>
Subject: RE: [gembud] Gempak-7.4.5.deb installationÂHi Paul, no problem! Youâll 
find it in your GEMPAK7/config directory.ÂCheers,ÂKevinÂ
_____________________________________________
Kevin Tyle, M.S., Manager of Departmental Computing
Dept. of Atmospheric & Environmental SciencesÂÂ 
University at Albany
Earth Science 235, 1400 Washington AvenueÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ 
Albany, NY 12222
Email: ktyle@xxxxxxxxxx
Phone: 518-442-4578ÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ 
_____________________________________________ÂFrom: Paul H. Lewis 
[mailto:phldml3@xxxxxxx] 
Sent: Wednesday, December 19, 2018 5:00 PM
To: Tyle, Kevin R <ktyle@xxxxxxxxxx>; 'Pete Pokrandt' <poker@xxxxxxxxxxxx>; 
'Michael James' <mjames@xxxxxxxx>
Cc: 'gembud' <gembud@xxxxxxxxxxxxxxxx>
Subject: RE: [gembud] Gempak-7.4.5.deb installationÂKevin,ÂThank you for this! 
Sorry for the noob question, but where is the Makeinc.common_linux file 
located?ÂI found Makefile in â/GEMPAK7/extlibs/netCDF that has the following 
line:ÂNETCDFÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ = $(OS-LIB)/libnetcdf.aÂIâm thinking that 
is the line that you are saying needs replaced, but Iâm hesitant to edit the 
change with out confirmation.ÂBest Regards,PaulÂÂFrom: 
gembud-bounces@xxxxxxxxxxxxxxxx [mailto:gembud-bounces@xxxxxxxxxxxxxxxx] On 
Behalf Of Tyle, Kevin R
Sent: Monday, December 17, 2018 2:05 PM
To: Pete Pokrandt <poker@xxxxxxxxxxxx>; Michael James <mjames@xxxxxxxx>
Cc: gembud <gembud@xxxxxxxxxxxxxxxx>
Subject: Re: [gembud] Gempak-7.4.5.deb installationÂI can report that the 
resulting HDF5 library errors are eliminated by editing Makeinc.common_linux so 
that the NETCDF line reads:ÂNETCDFÂÂÂÂÂÂÂÂÂÂÂ = $(OS_LIB)/libnetcdf.a -ldl -lz 
$(OS_LIB)/libhdf5_hl.a $(OS_LIB)/libhdf5.aÂÂÂ
_____________________________________________
Kevin Tyle, M.S., Manager of Departmental Computing
Dept. of Atmospheric & Environmental SciencesÂÂ 
University at Albany
Earth Science 235, 1400 Washington AvenueÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ 
Albany, NY 12222
Email: ktyle@xxxxxxxxxx
Phone: 518-442-4578ÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ 
_____________________________________________ÂFrom: Pete Pokrandt 
[mailto:poker@xxxxxxxxxxxx] 
Sent: Monday, December 17, 2018 12:58 PM
To: Michael James <mjames@xxxxxxxx>; Tyle, Kevin R <ktyle@xxxxxxxxxx>
Cc: gembud <gembud@xxxxxxxxxxxxxxxx>
Subject: Re: [gembud] Gempak-7.4.5.deb installationÂTo add to the conversation, 
I had a student trying to build on OSX with similar hdf and netcdf issues..ÂI 
haven't had a chance to look too deeply into it as she is back in China now, 
but it sounds very much like what we're discussing here.ÂPeteÂÂ--
Pete Pokrandt - Systems Programmer
UW-Madison Dept of Atmospheric and Oceanic Sciences
608-262-3086Â - poker@xxxxxxxxxxxxÂFrom: gembud-bounces@xxxxxxxxxxxxxxxx 
<gembud-bounces@xxxxxxxxxxxxxxxx> on behalf of Michael James <mjames@xxxxxxxx>
Sent: Monday, December 17, 2018 11:43 AM
To: Tyle, Kevin R
Cc: gembud
Subject: Re: [gembud] Gempak-7.4.5.deb installation ÂHi all,ÂIn NAWIPS 7.5.1, 
NCEP added support to display netCDF 4 GOES-16/17 satellite imagery, and so the 
library will be compiled with netcdf4 enabled from that release forward. In 
August I began to merge the NCEP 7.5.1 changes into Unidata GEMPAK, and removed 
the "âdisable-netcdf4" flag from the extlibs build, but have held back on 
releasing the 7.5.1 due to some compilation issues with the new im_rcdf4 and 
gossae4 subroutines (which is why Unidata GEMPAK is at release 7.4.5 right 
now).ÂThe RPMs and Debian binaries are containerized builds where on each OS 
GEMPAK is built from source, so I know for certain that the CentOS builds are 
complete *in those container environments* and within the installed RPMs. 
However, it appears that the Debian build is broken because of this, as 
mentioned here, and needs some attention from me to account for hdf5 and 
netcdf4.ÂMichael James Unidata Program CenterBoulder, COÂÂÂÂOn Mon, Dec 17, 
2018 at 9:22 AM Tyle, Kevin R <ktyle@xxxxxxxxxx> wrote:(haha, hit the send 
button too aggressively) â last sentence should read:ÂMaybe we could just go 
back to not enabling netcdf4 when netcdf is built?Â
_____________________________________________
Kevin Tyle, M.S., Manager of Departmental Computing
Dept. of Atmospheric & Environmental SciencesÂÂ 
University at Albany
Earth Science 235, 1400 Washington AvenueÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ 
Albany, NY 12222
Email: ktyle@xxxxxxxxxx
Phone: 518-442-4578ÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ 
_____________________________________________ÂFrom: 
gembud-bounces@xxxxxxxxxxxxxxxx [mailto:gembud-bounces@xxxxxxxxxxxxxxxx] On 
Behalf Of Tyle, Kevin R
Sent: Monday, December 17, 2018 11:18 AM
To: gembud <gembud@xxxxxxxxxxxxxxxx>
Subject: Re: [gembud] Gempak-7.4.5.deb installationÂThe configuration process 
for netCDF, as set in $NAWIPS/extlibs/netCDF/Makefile has removed 
âdisable-netcdf4 which existed in earlier versions. This makes netcdf look for 
locations of the hdf5 libraries and include directories. The latter is not 
properly specified in $NAWIPS/extlibs/netCDF/makefile.common . The NCENV line 
needs to have âCPPFLAGS=-I$(OS_INC)â. That eliminates the error with hdf5.inc 
not being found, and thus the netcdf configuration and build proceeds. Howver, 
later on in the build, errors linking to various hdf5 libraries occur, so some 
more work needs to be done there.ÂItâs unclear to me if thereâs some 
functionality in these most recent GEMPAK versions that require netCDF4 (and 
thus HDF5), so Iâm ccâing Michael James here. Maybe we could just go back to 
notÂ_____________________________________________
Kevin Tyle, M.S., Manager of Departmental Computing
Dept. of Atmospheric & Environmental SciencesÂÂ 
University at Albany
Earth Science 235, 1400 Washington AvenueÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ 
Albany, NY 12222
Email: ktyle@xxxxxxxxxx
Phone: 518-442-4578ÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ 
_____________________________________________ÂFrom: 
gembud-bounces@xxxxxxxxxxxxxxxx [mailto:gembud-bounces@xxxxxxxxxxxxxxxx] On 
Behalf Of Mike Zuranski
Sent: Sunday, December 16, 2018 4:41 PM
To: gembud <gembud@xxxxxxxxxxxxxxxx>
Subject: Re: [gembud] Gempak-7.4.5.deb installationÂ"Older versions of 7 built 
on Ubuntu."ÂÂThis was true for me as well, same system, pretty sure it was 
version 7.4.2. I looked at the GEMPAK Github page and saw they went with 
updated versions of zlib, hdf5 and netcdf4 in 7.4.3, so I feel like that's 
related.Â-Mike
Â======================Mike ZuranskiMeteorology Support AnalystCollege of 
DuPage - NexlabWeather.cod.edu======================ÂÂOn Sun, Dec 16, 2018 at 
3:15 PM Mullenax, Robert R. (WFF-820.0)[ORBITAL SCIENCES CORPORATION] 
<robert.r.mullenax@xxxxxxxx> wrote:I tried building on CentOS 7 and it failed 
with NetCDF as well. I sent a message to Unidata about it but did not get an 
auto reply from support-gempak so donât know if they got it. I didnât get a 
reply from gembud either. I just used the CentOS rpm and it worked ok. I have 
Ubuntu systems but have not tried to upgrade those yet. Older versions of 7 
built on Ubuntu.
On Dec 16, 2018, at 2:04 PM, Mike Zuranski <zuranski@xxxxxxxxxxxxxxx> wrote:Hi 
all, ÂI ran into the same issue and then some...ÂTraditionally I've always 
built GEMPAK from source, but figured I'd try the .deb file this time. After 
deploying it however, like Paul I didn't have most of the executables. Some of 
the decoders got built, maybe one or two other things, but no gd, gp or most 
other programs. So I tried building from source, but that didn't work either...

When building from source, it looked like it failed at making netCDF. I'm 
writing this from home so I don't have any log files on me at theÂmoment, but 
it appeared as though it made HDF5 okay, but the netCDF build couldn't find 
hdf5.h and failed. Without netCDF, those other programs failed as well. The 
strange part was hdf5.h seemed like it existed in the right place, so I'm not 
sure what happened. This was for both 7.4.3 and 7.4.5 on Ubuntu 18.04.1, I was 
going to try on another machine before writing in about it in case it was 
something local, but Paul described the same thing so maybe it's not just me.Â
Hope this provides some clues. If anyone wants more info, let me know and I 
can include make & configure logs when I get in the office on Monday.Â-Mike
Â======================Mike Zuranski Meteorology Support AnalystCollege of 
DuPage - Nexlab