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20040128: netCDF-3.5.0 on RH9

>From: "Wenwu Xia" <address@hidden>
>Organization: CIMMS/NSSL
>Keywords: 200401281517.i0SFHCp2005874 netCDF C++

Wenwu,

>My name is Wenwu Xia, and I am working in CIMMS/NSSL, Norman, OK. I 
>installed netCDF-3.5.0 package into Linux box with no problem, but I am 
>having some problem when trying to install it into RH9. Please check the 
>attached config.log file.
>
>I appreciate very much for your help.

Since the problems you report all seem to be related to building the
C++ interface, I will assume that the problem is in the use of newer
versions of gcc (g++) while building the C++ interface.  More recent
beta releases of the netCDF address this problem.  I, therefore, recommend
that you try using the latest beta, netcdf-3.5.1-beta13.tar.Z.
You can get this beta using anonymous FTP on our FTP server,
ftp.unidata.ucar.edu.  The distribution is located in the pub/netcdf
directory.

>Best regard,

Cheers,

Tom Yoksas

>Wenwu Xia
>CIMMS/NSSL
>Norman, OK
>(405)366-0528
>--------------010201080907080907080702
>Content-Type: text/plain;
> name="config.log"
>Content-Transfer-Encoding: 7bit
>Content-Disposition: inline;
> filename="config.log"
>
>This file contains any messages produced by compilers while
>running configure, to aid debugging if configure makes a mistake.
>
>configure:928: checking for top-level source-directory
>configure:938: checking for m4 preprocessor
>configure:945: checking for m4
>configure:1012: checking m4 flags
>configure:1040: checking for xlc
>configure:1040: checking for c89
>configure:1085: checking C compiler "c89"
>configure:1094: c89 -c -O -DNDEBUG conftest.c 1>&5
>configure:1121: checking how to make dependencies
>configure:1189: checking for CC
>configure:1189: checking for cxx
>configure:1189: checking for c++
>configure:1225: checking C++ compiler "c++"
>configure:1243: c++ -o conftest  -DNDEBUG  conftest.C  1>&5
>In file included from /usr/include/c++/3.2.2/backward/iostream.h:31,
>                 from configure:1235:
>/usr/include/c++/3.2.2/backward/backward_warning.h:32:2: warning: #warning Thi
> s file includes at least one deprecated or antiquated header. Please consider
>  using one of the 32 headers found in section 17.4.1.2 of the C++ standard. E
> xamples include substituting the <X> header for the <X.h> header for C++ incl
> udes, or <sstream> instead of the deprecated header <strstream.h>. To disable
>  this warning use -Wno-deprecated.
>In file included from /usr/include/c++/3.2.2/cstdlib:52,
>                 from /usr/include/c++/3.2.2/bits/stl_algobase.h:67,
>                 from /usr/include/c++/3.2.2/memory:54,
>                 from /usr/include/c++/3.2.2/string:48,
>                 from /usr/include/c++/3.2.2/bits/localefwd.h:49,
>                 from /usr/include/c++/3.2.2/ios:48,
>                 from /usr/include/c++/3.2.2/ostream:45,
>                 from /usr/include/c++/3.2.2/iostream:45,
>                 from /usr/include/c++/3.2.2/backward/iostream.h:32,
>                 from configure:1235:
>/usr/include/stdlib.h:612: declaration of `void exit(int) throw ()' throws 
>   different exceptions
>configure:1232: than previous declaration `void exit(int)'
>configure: failed program was:
>#line 1230 "configure"
>#include "confdefs.h"
>#ifdef __cplusplus
>extern "C" void exit(int);
>#endif
>
>                               #include <iostream.h>
>                               int main() {
>                                   cout << "";
>                                   return 0;
>                               }
>                           
>configure:1189: checking for g++
>configure:1225: checking C++ compiler "g++"
>configure:1243: g++ -o conftest  -DNDEBUG  conftest.C  1>&5
>In file included from /usr/include/c++/3.2.2/backward/iostream.h:31,
>                 from configure:1235:
>/usr/include/c++/3.2.2/backward/backward_warning.h:32:2: warning: #warning Thi
> s file includes at least one deprecated or antiquated header. Please consider
>  using one of the 32 headers found in section 17.4.1.2 of the C++ standard. E
> xamples include substituting the <X> header for the <X.h> header for C++ incl
> udes, or <sstream> instead of the deprecated header <strstream.h>. To disable
>  this warning use -Wno-deprecated.
>In file included from /usr/include/c++/3.2.2/cstdlib:52,
>                 from /usr/include/c++/3.2.2/bits/stl_algobase.h:67,
>                 from /usr/include/c++/3.2.2/memory:54,
>                 from /usr/include/c++/3.2.2/string:48,
>                 from /usr/include/c++/3.2.2/bits/localefwd.h:49,
>                 from /usr/include/c++/3.2.2/ios:48,
>                 from /usr/include/c++/3.2.2/ostream:45,
>                 from /usr/include/c++/3.2.2/iostream:45,
>                 from /usr/include/c++/3.2.2/backward/iostream.h:32,
>                 from configure:1235:
>/usr/include/stdlib.h:612: declaration of `void exit(int) throw ()' throws 
>   different exceptions
>configure:1232: than previous declaration `void exit(int)'
>configure: failed program was:
>#line 1230 "configure"
>#include "confdefs.h"
>#ifdef __cplusplus
>extern "C" void exit(int);
>#endif
>
>                               #include <iostream.h>
>                               int main() {
>                                   cout << "";
>                                   return 0;
>                               }
>                           
>configure:1189: checking for gcc
>configure:1225: checking C++ compiler "gcc"
>configure:1243: gcc -o conftest  -DNDEBUG  conftest.C  1>&5
>In file included from /usr/include/c++/3.2.2/backward/iostream.h:31,
>                 from configure:1235:
>/usr/include/c++/3.2.2/backward/backward_warning.h:32:2: warning: #warning Thi
> s file includes at least one deprecated or antiquated header. Please consider
>  using one of the 32 headers found in section 17.4.1.2 of the C++ standard. E
> xamples include substituting the <X> header for the <X.h> header for C++ incl
> udes, or <sstream> instead of the deprecated header <strstream.h>. To disable
>  this warning use -Wno-deprecated.
>In file included from /usr/include/c++/3.2.2/cstdlib:52,
>                 from /usr/include/c++/3.2.2/bits/stl_algobase.h:67,
>                 from /usr/include/c++/3.2.2/memory:54,
>                 from /usr/include/c++/3.2.2/string:48,
>                 from /usr/include/c++/3.2.2/bits/localefwd.h:49,
>                 from /usr/include/c++/3.2.2/ios:48,
>                 from /usr/include/c++/3.2.2/ostream:45,
>                 from /usr/include/c++/3.2.2/iostream:45,
>                 from /usr/include/c++/3.2.2/backward/iostream.h:32,
>                 from configure:1235:
>/usr/include/stdlib.h:612: declaration of `void exit(int) throw ()' throws 
>   different exceptions
>configure:1232: than previous declaration `void exit(int)'
>configure: failed program was:
>#line 1230 "configure"
>#include "confdefs.h"
>#ifdef __cplusplus
>extern "C" void exit(int);
>#endif
>
>                               #include <iostream.h>
>                               int main() {
>                                   cout << "";
>                                   return 0;
>                               }
>                           
>configure:1294: checking how to run the C preprocessor
>configure:1315: c89 -E -DNDEBUG conftest.c >/dev/null 2>conftest.out
>configure:1475: checking for f77
>configure:1516: f77 -c  conftest.f
>configure:1548: checking for Fortran .F compiler
>configure:1558: checking if Fortran-77 compiler handles *.F files
>configure:1569: f77 -o conftest  conftest.F 
>configure:1638: checking "f77" as Fortran-90 compiler
>configure:1640: f77 -o conftest  conftest.f90 
>/usr/bin/ld:conftest.f90: file format not recognized; treating as linker scrip
> t
>/usr/bin/ld:conftest.f90:1: parse error
>collect2: ld returned 1 exit status
>configure:1669: checking for xlf90
>configure:1669: checking for f90
>configure:1751: checking for nm utility
>configure:1758: checking for nm
>configure:1825: checking nm flags
>configure:1841: checking for C-equivalent to Fortran routine "SUB"
>configure:1847: f77 -c  conftest.f
>configure:1876: checking for Fortran "byte"
>configure:1883: f77 -c  conftest.f
>configure:1900: checking for Fortran "integer*2"
>configure:1907: f77 -c  conftest.f
>configure:1933: checking if Fortran "byte" is C "signed char"
>configure:1942: c89 -c -DNDEBUG -O conftest.c
>configure:1944: f77  -c conftestf.f
>configure:1946: f77 -o conftest   conftestf.o conftest.o 
>configure:1948: ./conftest
>configure:1981: checking if Fortran "byte" is C "short"
>configure:1990: c89 -c -DNDEBUG -O conftest.c
>configure:1992: f77  -c conftestf.f
>configure:1994: f77 -o conftest   conftestf.o conftest.o 
>configure:1996: ./conftest
>configure:2029: checking if Fortran "byte" is C "int"
>configure:2038: c89 -c -DNDEBUG -O conftest.c
>configure:2040: f77  -c conftestf.f
>configure:2042: f77 -o conftest   conftestf.o conftest.o 
>configure:2044: ./conftest
>configure:2077: checking if Fortran "byte" is C "long"
>configure:2086: c89 -c -DNDEBUG -O conftest.c
>configure:2088: f77  -c conftestf.f
>configure:2090: f77 -o conftest   conftestf.o conftest.o 
>configure:2092: ./conftest
>configure:2129: checking if Fortran "integer*2" is C "short"
>configure:2138: c89 -c -DNDEBUG -O conftest.c
>configure:2140: f77  -c conftestf.f
>configure:2142: f77 -o conftest   conftestf.o conftest.o 
>configure:2144: ./conftest
>configure:2177: checking if Fortran "integer*2" is C "int"
>configure:2186: c89 -c -DNDEBUG -O conftest.c
>configure:2188: f77  -c conftestf.f
>configure:2190: f77 -o conftest   conftestf.o conftest.o 
>configure:2192: ./conftest
>configure:2225: checking if Fortran "integer*2" is C "long"
>configure:2234: c89 -c -DNDEBUG -O conftest.c
>configure:2236: f77  -c conftestf.f
>configure:2238: f77 -o conftest   conftestf.o conftest.o 
>configure:2240: ./conftest
>configure:2275: checking if Fortran "integer" is C "int"
>configure:2284: c89 -c -DNDEBUG -O conftest.c
>configure:2286: f77  -c conftestf.f
>configure:2288: f77 -o conftest   conftestf.o conftest.o 
>configure:2290: ./conftest
>configure:2323: checking if Fortran "real" is C "float"
>configure:2332: c89 -c -DNDEBUG -O conftest.c
>configure:2334: f77  -c conftestf.f
>configure:2336: f77 -o conftest   conftestf.o conftest.o 
>configure:2338: ./conftest
>configure:2371: checking if Fortran "doubleprecision" is C "double"
>configure:2380: c89 -c -DNDEBUG -O conftest.c
>configure:2382: f77  -c conftestf.f
>configure:2384: f77 -o conftest   conftestf.o conftest.o 
>configure:2386: ./conftest
>configure:2413: checking for Fortran-equivalent to netCDF "byte"
>configure:2420: f77 -c  conftest.f
>configure:2435: checking for Fortran-equivalent to netCDF "short"
>configure:2442: f77 -c  conftest.f
>configure:2462: checking for math library
>configure:2466: checking for tanh in -lc
>configure:2485: c89 -o conftest -O -DNDEBUG  conftest.c -lc   1>&5
>/tmp/ccIlFeAi.o(.text+0xa): In function `main':
>: undefined reference to `tanh'
>collect2: ld returned 1 exit status
>configure: failed program was:
>#line 2474 "configure"
>#include "confdefs.h"
>/* Override any gcc2 internal prototype to avoid an error.  */
>/* We use char because int might match the return type of a gcc2
>    builtin and then its argument prototype would still apply.  */
>char tanh();
>
>int main() {
>tanh()
>; return 0; }
>configure:2504: checking for tanh in -lm
>configure:2523: c89 -o conftest -O -DNDEBUG  conftest.c -lm   1>&5
>configure:2555: checking for ar utility
>configure:2562: checking for ar
>configure:2629: checking ar flags
>configure:2638: checking for nm utility
>configure:2680: checking for nm
>configure:2712: checking nm flags
>configure:2722: checking for ranlib
>configure:2751: checking for stdlib.h
>configure:2761: c89 -E -DNDEBUG conftest.c >/dev/null 2>conftest.out
>configure:2788: checking for sys/types.h
>configure:2798: c89 -E -DNDEBUG conftest.c >/dev/null 2>conftest.out
>configure:2824: checking for strerror
>configure:2852: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>configure:2877: checking for working ftruncate()
>configure:2930: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>/tmp/cc6koIhD.o(.text+0x15): In function `main':
>: the use of `tmpnam' is dangerous, better use `mkstemp'
>configure:2952: checking for working alloca.h
>configure:2964: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>configure:2985: checking for alloca
>configure:3018: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>configure:3184: checking for st_blksize in struct stat
>configure:3197: c89 -c -O -DNDEBUG conftest.c 1>&5
>configure:3219: checking for IEEE floating point format
>configure:3257: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>configure:3278: checking for ANSI C header files
>configure:3291: c89 -E -DNDEBUG conftest.c >/dev/null 2>conftest.out
>configure:3358: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>configure:3382: checking for size_t
>configure:3415: checking for off_t
>configure:3448: checking for ssize_t
>configure:3481: checking for ptrdiff_t
>configure:3514: checking for uchar
>configure:3547: checking whether char is unsigned
>configure:3586: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>configure: failed program was:
>#line 3576 "configure"
>#include "confdefs.h"
>/* volatile prevents gcc2 from optimizing the test away on sparcs.  */
>#if !defined(__STDC__) || __STDC__ != 1
>#define volatile
>#endif
>main() {
>  volatile char c = 255; exit(c < 0);
>}
>configure:3610: checking whether byte ordering is bigendian
>configure:3628: c89 -c -O -DNDEBUG conftest.c 1>&5
>configure: In function `main':
>configure:3623: `bogus' undeclared (first use in this function)
>configure:3623: (Each undeclared identifier is reported only once
>configure:3623: for each function it appears in.)
>configure:3623: parse error before "endian"
>configure: failed program was:
>#line 3617 "configure"
>#include "confdefs.h"
>#include <sys/types.h>
>#include <sys/param.h>
>int main() {
>
>#if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN
> bogus endian macros
>#endif
>; return 0; }
>configure:3676: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>configure:3700: checking size of short
>configure:3719: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>configure:3739: checking size of int
>configure:3758: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>configure:3778: checking size of long
>configure:3797: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>configure:3817: checking size of float
>configure:3836: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>configure:3856: checking size of double
>configure:3875: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>configure:3895: checking size of off_t
>configure:3918: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>configure:3938: checking size of size_t
>configure:3961: c89 -o conftest -O -DNDEBUG  conftest.c  1>&5
>configure:4062: checking for manual-page index command
>configure:4066: checking binary distribution directory
>
>--------------010201080907080907080702--
>
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>From address@hidden Fri Jan 30 10:02:22 2004

Hi Tom,

Thank you very much for your assistance and the new version of netcdf 
package works fine on RH9.

Wenwu Xia