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20000512: putget.c compile failure on Cray J90

Pascale,

> From: Pascale Lherminier <address@hidden>
> Subject: netcdf installation failed
> Organization: Naval Postgraduate School
> Keywords: 200005121845.e4CIj9415880 netCDF Cray J90 f90 C++

In the above message, you wrote:

> After several tries, I could not figure out why the installation
> of the netcdf library failed. My goal was to install it on
> my private directory first to make a couple of compatibility
> tests and use it for the outputs of our model ... but 'make'
> failed. Perhaps is it due to older versions of C,C++ and F90
> than those you used to test the installation ...?
> So here are the informations you ask for in such a case:
> 
> Machine specifications:
> 
> jedi jedi 10.0.0.6 roo.0 CRAY J90
> Cray Standard C Version 5.0.3.0  (d29p35g115a35) May 12 2000  10:59:39
> Cray C++ Version 2.0.3 05/12/00 10:59:46
> Cray CF90 Version 2.0.3.0 05/12/00 10:59:54
> 
> Version : 3.4
> All the compilers are in /opt/ctl/bin
> (cc, f90 and CC).
> 
> ------------------------------------------------------------
> 
> The job I submitted to install netcdf:
> 
> # QSUB -q reg 
> # QSUB -lT 20000 
> # QSUB -lM 40Mw
> # QSUB -me  -mb
> # QSUB -e netcdf.err
> # QSUB -o netcdf.out
> #
> ja 
> setenv CC /opt/ctl/bin/cc
> setenv CPPFLAGS 
> setenv CFLAGS -O3
> setenv FC /opt/ctl/bin/f90
> setenv FFLAGS "-g -F -dp"
> setenv CXX /opt/ctl/bin/CC
> setenv CXXFLAGS
> 
> cd /u0/pascale/netcdf-3.4/src
> #cd libsrc
> #cp ncx.c ncx.c.old
> #cp ncx_cray.c ncx.c
> #cd ..
> ./configure
> make
> #make test
> #make install
> 
> ja -st 
> 
> # done.
> exit 0
> 
> --------------------------------------------------------------
> 
> I attached config.log, and also the output and error files to 
> this e-mail.
> 
> Thank you very much for you help and the very good explanations
> in the INSTALL file.
> 
> Best regards,
> Pascale Lherminier.
> 
> 
> -- 
> Pascale Lherminier            | Tel.: (int) (1) (831) 656 3260
> Dpt of Oceanography           | Fax.: (int) (1) (831) 656 2712
> Naval Postgraduate School     | E-mail : address@hidden
> Monterey, CA93943, USA          | http://www.oc.nps.navy.mil/opbl
> --------------3A9BD479F27089BA558E59AD
> Content-Type: text/plain; charset=us-ascii;
>  name="netcdf.out"
> Content-Transfer-Encoding: 7bit
> Content-Disposition: inline;
>  filename="netcdf.out"
> 
> creating cache ./config.cache
> checking for m4... m4
> checking user-defined C compiler "/opt/ctl/bin/cc"
> checking C compiler... works
> checking how to make dependencies... false
> checking for /opt/ctl/bin/CC... /opt/ctl/bin/CC
> checking C++ compiler "/opt/ctl/bin/CC"... works
> checking how to run the C preprocessor... /opt/ctl/bin/cc -E
> checking user-defined Fortran compiler "/opt/ctl/bin/f90"... works
> checking for Fortran .F compiler... 
> checking if Fortran compiler handles *.F files... yes
> checking for C-equivalent to Fortran routine "SUB"... SUB
> checking for Fortran "byte"... no
> checking for Fortran "integer*1"... yes
> checking for Fortran "integer*2"... yes
> checking if Fortran "integer*1" is C "signed char"... no
> checking if Fortran "integer*1" is C "short"... yes
> checking if Fortran "integer*1" is C "int"... yes
> checking if Fortran "integer*1" is C "long"... yes
> checking if Fortran "integer*2" is C "short"... yes
> checking if Fortran "integer*2" is C "int"... yes
> checking if Fortran "integer*2" is C "long"... yes
> checking if Fortran "integer" is C "int"... yes
> checking if Fortran "real" is C "float"... yes
> checking if Fortran "doubleprecision" is C "double"... yes
> checking for Fortran-equivalent to netCDF "byte"... integer*1
> checking for Fortran-equivalent to netCDF "short"... integer*2
> checking for math library
> checking for -lc... yes
> checking for ar... ar
> checking for ranlib... ranlib
> checking for stdlib.h... yes
> checking for sys/types.h... yes
> checking for strerror... yes
> checking whether cross-compiling... no
> checking for working ftruncate()... no
> checking for working alloca.h... no
> checking for alloca... no
> checking whether alloca needs Cray hooks... yes
> checking for _getb67... yes
> checking stack direction for C alloca... 1
> checking for st_blksize in struct stat... yes
> checking for IEEE floating point format... no
> checking for ANSI C header files... yes
> checking for size_t... yes
> checking for off_t... yes
> checking for ssize_t... yes
> checking for ptrdiff_t... yes
> checking for uchar... yes
> checking whether char is unsigned... yes
> checking whether byte ordering is bigendian... yes
> checking size of short... 8
> checking size of int... 8
> checking size of long... 8
> checking size of float... 8
> checking size of double... 8
> checking size of off_t... 8
> checking size of size_t... 8
> checking for catman... no
> checking for makewhatis... no
> checking for manual-page index command... 
> checking binary distribution directory... /home/ftp/pub/binary/dummy_system
> updating cache ./config.cache
> creating ./config.status
> creating macros.make
> udcreating fortran/nfconfig.inc
> creating libsrc/ncconfig.h
> 
> Making `all' in directory /u0/pascale/netcdf-3.4/src/libsrc
> 
>       /opt/ctl/bin/cc -c -O3 -I.   attr.c
>       /opt/ctl/bin/cc -c -O3 -I.   dim.c
>       /opt/ctl/bin/cc -c -O3 -I.   error.c
>       /opt/ctl/bin/cc -c -O3 -I.   -DVERSION=`cat ../VERSION` libvers.c
>       /opt/ctl/bin/cc -c -O3 -I.   nc.c
>       /opt/ctl/bin/cc -c -O3 -I.   ncio.c
>       /opt/ctl/bin/cc -c -O3 -I.   ncx.c
>       /opt/ctl/bin/cc -c -O3 -I.   putget.c
> 
>   Traceback initiated at "output_msg"+01056a (P = 0407213d, line 506)
> 
>  "output_msg" called by "PRINTMSG" (P = 0406126c, line 196) with 5 arguments
>      1)   0000000000000000023777 -> (0000000000000001557503 = 450371)
>      2)   0000000000000000020065 -> (1777777777777777777740 = -32)
>      3)   0000000000000000000005 -> (0001641105526760312266 = '_t$Z____')
>      4)   0000000000000000000000 -> (0)
>      5)   0000000000000000513241 -> (0000000000000000200467 = 65847)
>  "PRINTMSG" called by "SORTED_PRINTMSG" (P = 01717515c, line 1314) with 8 
> arguments
>      1)   0000000000000000023777 -> (0000000000000001557503 = 450371)
>      2)   0000000000000000020065 -> (1777777777777777777740 = -32)
>      3)   0000000000000000000005 -> (0001641105526760312266 = '_t$Z____')
>      4)   0000000000000000000000 -> (0)
>      5)   0000000000000000200467 -> (0401001623446115033137 = '@@99146_')
>      6)   0200000000000000200527  =  0200000000000000200527 = ' ______W'
>      7)   0400000000000000200567  =  0400000000000000200567 = '@______w'
>      8)   0600000000000000200627  =  0600000000000000200627 = '`_______'
>  "SORTED_PRINTMSG" called by "cmcs_message" (P = 02223076c, line 409) with 8 
> arguments
>      1)   0000000000000000023777 -> (0000000000000001557503 = 450371)
>      2)   0000000000000000020065 -> (1777777777777777777740 = -32)
>      3)   0000000000000000000005 -> (0001641105526760312266 = '_t$Z____')
>      4)   0000000000000000000000 -> (0)
>      5)   0000000000000000200467 -> (0401001623446115033137 = '@@99146_')
>      6)   0200000000000000200527  =  0200000000000000200527 = ' ______W'
>      7)   0400000000000000200567  =  0400000000000000200567 = '@______w'
>      8)   0600000000000000200627  =  0600000000000000200627 = '`_______'
>  "cmcs_message" called by "ccg_ref" (P = 02215044a, line 7450) with 1 
> argument 
>      1)   0000000000000000020065 -> (1777777777777777777740 = -32)
>  "ccg_ref" called by "stidx_val" (P = 0542764d, line 6328) with 5 arguments
>      1)   0000000000000005274175 -> (0700000000000000000000 = 'p_______')
>      2)   0000000000000000000000 -> (0)
>      3)   0000000000000000000000 -> (0)
>      4)   0000000000000000000041 -> (0)
>      5)   0000000000000000000000 -> (0)
>  "stidx_val" called by "gen_a_call" (P = 0540671d, line 5816) with 3 arguments
>      1)   0000000000000000000663 -> (0445221006155733473145 = 'IR conve')
>      2)   0000000000000000000001 -> (9)
>      3)   0000000000000000000002 -> (0000000000000000507315 = 167629)
>  "gen_a_call" called by "gen_asg" (P = 0532706a, line 4578) with 3 arguments
>      1)   0000000000000000000001 -> (9)
>      2)   0000000000000000513005 -> (0000000000000015372041 = 3535905)
>      3)   0000000000000000000000 -> (0)
>  "gen_asg" called by "process_func_body" (P = 0525150d, line 3228) with 3 
> arguments
>      1)   0000000000000000000013 -> (0000000000000000315472 = 105274)
>      2)   0000000000000000512756 -> (14)
>      3)   0000000000000000000000 -> (0)
>  "process_func_body" called by "PDGCS_do_proc" (P = 01270174a, line 3002) 
> with 1 argument 
>      1)   0000000000000000000345 -> (0)
>  "PDGCS_do_proc" called by "generate_pdg" (P = 066230c, line 322) with 0 
> arguments
>  "generate_pdg" called by "main" (P = 0171522d, line 341) with 4 arguments
>      1)   0000000000000000015145 -> (0)
>      2)   0000000000000000015146 -> (0)
>      3)   0000000000000000000011 -> (0)
>      4)   0000000000000000507315 -> (0000000000000000507414 = 167692)
>  "main" called by "$START$" (P = 02751402c, line 389) with 3 arguments
>      1)   0000000000000000000011 -> (0)
>      2)   0000000000000000507315 -> (0000000000000000507414 = 167692)
>      3)   0000000000000000507327 -> (0600000000000000507434 = '`_______')

"/opt/ctl/bin/cc" fails to compile "libsrc/putget.c", eh?

We've had some problems before compiling that file on J90-s, though
they didn't have the same symptoms as yours.

Try dropping into the "libsrc/" directory and executing the following
command manually:

    /opt/ctl/bin/cc -c -O2 -I.   putget.c

(This is the same command that failed before except that the "-O3"
option has been replaced with "-O2".)  Does it work?

Regards,
Steve Emmerson   <http://www.unidata.ucar.edu>