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970811: Help installation netCDF 3.3.1

Dear Shuhei OKUBO,

> To: address@hidden
> From: address@hidden (Shuhei OKUBO)
> Subject: Help installation, please
> Organization: University of TOKYO/Earthquake Research Institute
> Keywords: 199708010835.CAA07349

In the above message, you wrote:

> Dear Sirs:
> 
> I would greatly appreciate your help
> of installing netCDF 3.3.1 on my WS.
> 
> Problem is that 
> compilation of  "ncdump.c" fails: 
> "_memmove" not found.
> 
> a)  I am using "gcc" , "g++" and "f77" ( SC1.0)
> b) I chose enviroment variables as follows.
>  CPPFLAGS=-DNDEBUG
>  CC =gcc
>  CFLAGS='-O '
>  FC=f77
>  FFLAGS='-O -temp=.'
>  CXX=g++
>  LIBS=/usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a
> 
> 
> For your reference, I enclose 
> 1) out of "uname -a"
> 2) VERSION
> 3) output and error output of "configure"
> 4) config.log
> 5) output and error output of "make"
> 
> Best regards,
> 
> Dr. Shuhei OKUBO
> Earthquake Research Institute
> University of TOKYO
> Fax:+81-3-5802-3317
> 
> ==============
> 1) out of "uname -a ":  SunOS gravity 4.1.4-JL 1 sun4m
> ==============
> 2) VERSION:  3.3.1
> ==============
> 3) output and error output of "configure"
> 
> creating cache ./config.cache
> checking for m4... m4
> checking user-defined C compiler "gcc"
> checking C compiler... works
> checking how to make dependencies... cc -M
> checking for g++... g++
> checking C++ compiler "g++"... works
> checking how to run the C preprocessor... gcc -E
> checking user-defined FORTRAN compiler "f77"... works
> checking for FORTRAN .F compiler... 
> checking if FORTRAN compiler handles *.F files... yes
> checking for C-equivalent to FORTRAN routine "SUB"... sub_
> checking for FORTRAN "byte"... yes
> checking for FORTRAN "integer*2"... yes
> checking if FORTRAN "byte" is C "signed char"... yes
> checking if FORTRAN "byte" is C "short"... no
> checking if FORTRAN "byte" is C "int"... no
> checking if FORTRAN "integer*2" is C "short"... yes
> checking if FORTRAN "integer*2" is C "int"... no
> checking if FORTRAN "integer" is C "int"... yes
> checking if FORTRAN "real" is C "float"... yes
> checking if FORTRAN "doubleprecision" is C "double"... yes
> checking for FORTRAN-equivalent to netCDF "byte"... byte
> checking for FORTRAN-equivalent to netCDF "short"... integer*2
> checking for math library
> checking for -lc... no
> checking for -lm... yes
> checking for ar... ar
> checking for ranlib... ranlib
> checking for stdlib.h... yes
> checking for sys/types.h... yes
> checking for strerror... no
> checking for ftruncate... yes
> checking for st_blksize in struct stat... yes
> checking whether cross-compiling... no
> checking for IEEE floating point format... yes
> checking for ANSI C header files... no
> checking for size_t... yes
> checking for off_t... yes
> checking for ssize_t... no
> checking for ptrdiff_t... yes
> checking for uchar... no
> checking whether char is unsigned... no
> checking whether byte ordering is bigendian... yes
> checking size of short... 2
> checking size of int... 4
> checking size of long... 4
> checking size of float... 4
> checking size of double... 8
> checking size of off_t... 4
> checking size of size_t... 4
> checking for catman... catman
> checking for manual-page index command... catman -w -M $(MANDIR)
> checking binary distribution directory... /home/ftp/pub/binary/dummy_system
> updating cache ./config.cache
> creating ./config.status
> creating macros.make
> udcreating fortran/nfconfig.inc
> fortran/nfconfig.inc is unchanged
> creating libsrc/ncconfig.h
> libsrc/ncconfig.h is unchanged
> 
> 
> ==============
> 4) config.log
> This file contains any messages produced by compilers while
> running configure, to aid debugging if configure makes a mistake.
> 
> configure:1017: gcc -c -O -DNDEBUG conftest.c 1>&5
> configure:1150: g++ -c  -DNDEBUG conftest.C 1>&5
> configure:1217: gcc -E -DNDEBUG conftest.c >/dev/null 2>conftest.out
> configure:1316: f77 -c -O -temp=. conftest.f
> conftest.f:
>  MAIN:
> configure:1415: f77 -o conftest -O -temp=. conftest.F  
> ./cpp.22471.0.f:
>  MAIN:
> "conftest.F", line 3: Warning: local variable "r" never used
> configure:1456: f77 -c -O -temp=. conftest.f
> conftest.f:
>  MAIN:
> configure:1491: f77 -c -O -temp=. conftest.f
> conftest.f:
>         sub:
> configure:1514: f77 -c -O -temp=. conftest.f
> conftest.f:
>         sub:
> configure:1548: gcc -c -DNDEBUG -O conftest.c
> configure:1550: f77 -o conftest -O -temp=.  conftestf.f conftest.o
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a
> conftestf.f:
>  MAIN:
> configure:1552: ./conftest
> configure:1590: gcc -c -DNDEBUG -O conftest.c
> configure:1592: f77 -o conftest -O -temp=.  conftestf.f conftest.o
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a
> conftestf.f:
>  MAIN:
> configure:1594: ./conftest
> configure:1632: gcc -c -DNDEBUG -O conftest.c
> configure:1634: f77 -o conftest -O -temp=.  conftestf.f conftest.o
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a
> conftestf.f:
>  MAIN:
> configure:1636: ./conftest
> configure:1678: gcc -c -DNDEBUG -O conftest.c
> configure:1680: f77 -o conftest -O -temp=.  conftestf.f conftest.o
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a
> conftestf.f:
>  MAIN:
> configure:1682: ./conftest
> configure:1720: gcc -c -DNDEBUG -O conftest.c
> configure:1722: f77 -o conftest -O -temp=.  conftestf.f conftest.o
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a
> conftestf.f:
>  MAIN:
> configure:1724: ./conftest
> configure:1764: gcc -c -DNDEBUG -O conftest.c
> configure:1766: f77 -o conftest -O -temp=.  conftestf.f conftest.o
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a
> conftestf.f:
>  MAIN:
> configure:1768: ./conftest
> configure:1806: gcc -c -DNDEBUG -O conftest.c
> configure:1808: f77 -o conftest -O -temp=.  conftestf.f conftest.o
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a
> conftestf.f:
>  MAIN:
> configure:1810: ./conftest
> configure:1848: gcc -c -DNDEBUG -O conftest.c
> configure:1850: f77 -o conftest -O -temp=.  conftestf.f conftest.o
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a
> conftestf.f:
>  MAIN:
> configure:1852: ./conftest
> configure:1882: f77 -c -O -temp=. conftest.f
> conftest.f:
>  MAIN:
> "conftest.f", line 1: Warning: local variable "foo" never used
> configure:1903: f77 -c -O -temp=. conftest.f
> conftest.f:
>  MAIN:
> "conftest.f", line 1: Warning: local variable "foo" never used
> configure:1943: gcc -o conftest -O -DNDEBUG  conftest.c -lc 
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 1>&5
> collect2: ld returned 2 exit status
> ld: Undefined symbol 
>    _tanh 
> configure:1977: gcc -o conftest -O -DNDEBUG  conftest.c -lm 
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 1>&5
> configure:2072: gcc -E -DNDEBUG conftest.c >/dev/null 2>conftest.out
> configure:2106: gcc -E -DNDEBUG conftest.c >/dev/null 2>conftest.out
> configure:2156: gcc -o conftest -O -DNDEBUG  conftest.c
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 1>&5
> collect2: ld returned 2 exit status
> ld: Undefined symbol 
>    _strerror 
> configure:2204: gcc -o conftest -O -DNDEBUG  conftest.c
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 1>&5
> configure:2238: gcc -c -O -DNDEBUG conftest.c 1>&5
> configure:2270: gcc -o conftest -O -DNDEBUG  conftest.c
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 1>&5
> configure:2322: gcc -o conftest -O -DNDEBUG  conftest.c
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 1>&5
> configure:2351: gcc -E -DNDEBUG conftest.c >/dev/null 2>conftest.out
> configure:2672: gcc -c -O -DNDEBUG conftest.c 1>&5
> configure: In function `t':
> configure:2667: `bogus' undeclared (first use this function)
> configure:2667: (Each undeclared identifier is reported only once
> configure:2667: for each function it appears in.)
> configure:2667: parse error before `endian'
> configure:2718: gcc -o conftest -O -DNDEBUG  conftest.c
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 1>&5
> configure:2756: gcc -o conftest -O -DNDEBUG  conftest.c
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 1>&5
> configure:2790: gcc -o conftest -O -DNDEBUG  conftest.c
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 1>&5
> configure:2824: gcc -o conftest -O -DNDEBUG  conftest.c
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 1>&5
> configure:2858: gcc -o conftest -O -DNDEBUG  conftest.c
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 1>&5
> configure:2892: gcc -o conftest -O -DNDEBUG  conftest.c
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 1>&5
> configure:2930: gcc -o conftest -O -DNDEBUG  conftest.c
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 1>&5
> configure:2968: gcc -o conftest -O -DNDEBUG  conftest.c
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 1>&5
> 
> ==============
> 5) output and error output of "make"
> make[1]: Entering directory `/data2/netcdf/netcdf-3.3.1/src'
> 
> Making `all' in directory /data2/netcdf/netcdf-3.3.1/src/libsrc
> 
> make[2]: Entering directory `/data2/netcdf/netcdf-3.3.1/src/libsrc'
> gcc -c -O -I.  -DNDEBUG attr.c
> gcc -c -O -I.  -DNDEBUG dim.c
> gcc -c -O -I.  -DNDEBUG error.c
> gcc -c -O -I.  -DNDEBUG -DVERSION=`cat ../VERSION` libvers.c
> gcc -c -O -I.  -DNDEBUG nc.c
> gcc -c -O -I.  -DNDEBUG ncio.c
> gcc -c -O -I.  -DNDEBUG ncx.c
> gcc -c -O -I.  -DNDEBUG putget.c
> gcc -c -O -I.  -DNDEBUG string.c
> gcc -c -O -I.  -DNDEBUG v1hpg.c
> gcc -c -O -I.  -DNDEBUG v2i.c
> gcc -c -O -I.  -DNDEBUG var.c
> ar cru   libnetcdf.a attr.o dim.o error.o libvers.o nc.o ncio.o ncx.o
> putget.o string.o v1hpg.o v2i.o var.o
> ranlib libnetcdf.a
> make[2]: Leaving directory `/data2/netcdf/netcdf-3.3.1/src/libsrc'
> 
> Returning to directory /data2/netcdf/netcdf-3.3.1/src
> 
> make[1]: Leaving directory `/data2/netcdf/netcdf-3.3.1/src'
> make[1]: Entering directory `/data2/netcdf/netcdf-3.3.1/src'
> 
> Making `all' in directory /data2/netcdf/netcdf-3.3.1/src/fortran
> 
> make[2]: Entering directory `/data2/netcdf/netcdf-3.3.1/src/fortran'
> gcc -c -O -I../libsrc  -DNDEBUG fort-attio.c
> gcc -c -O -I../libsrc  -DNDEBUG fort-control.c
> gcc -c -O -I../libsrc  -DNDEBUG fort-dim.c
> gcc -c -O -I../libsrc  -DNDEBUG fort-genatt.c
> gcc -c -O -I../libsrc  -DNDEBUG fort-geninq.c
> gcc -c -O -I../libsrc  -DNDEBUG fort-genvar.c
> gcc -c -O -I../libsrc  -DNDEBUG fort-lib.c
> gcc -c -O -I../libsrc  -DNDEBUG fort-misc.c
> gcc -c -O -I../libsrc  -DNDEBUG fort-v2compat.c
> gcc -c -O -I../libsrc  -DNDEBUG fort-vario.c
> gcc -c -O -I../libsrc  -DNDEBUG fort-var1io.c
> gcc -c -O -I../libsrc  -DNDEBUG fort-varaio.c
> gcc -c -O -I../libsrc  -DNDEBUG fort-varmio.c
> gcc -c -O -I../libsrc  -DNDEBUG fort-varsio.c
> ar cru   ../libsrc/libnetcdf.a fort-attio.o fort-control.o fort-dim.o
> fort-genatt.o fort-geninq.o fort-genvar.o fort-lib.o fort-misc.o
> fort-v2compat.o fort-vario.o fort-var1io.o fort-varaio.o fort-varmio.o
> fort-varsio.o
> ranlib ../libsrc/libnetcdf.a
> make[2]: Leaving directory `/data2/netcdf/netcdf-3.3.1/src/fortran'
> 
> Returning to directory /data2/netcdf/netcdf-3.3.1/src
> 
> make[1]: Leaving directory `/data2/netcdf/netcdf-3.3.1/src'
> make[1]: Entering directory `/data2/netcdf/netcdf-3.3.1/src'
> 
> Making `all' in directory /data2/netcdf/netcdf-3.3.1/src/ncdump
> 
> make[2]: Entering directory `/data2/netcdf/netcdf-3.3.1/src/ncdump'
> gcc -c -O -I../libsrc  -DNDEBUG ncdump.c
> gcc -c -O -I../libsrc  -DNDEBUG vardata.c
> gcc -c -O -I../libsrc  -DNDEBUG dumplib.c
> gcc -o ncdump -O  ncdump.o vardata.o dumplib.o -L../libsrc -lnetcdf
> /usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 
> collect2: ld returned 2 exit status
> ld: Undefined symbol 
>    _memmove 
> make[2]: *** [ncdump] Error 1
> make[2]: Leaving directory `/data2/netcdf/netcdf-3.3.1/src/ncdump'
> make[1]: *** [subdir_target] Error 1
> make[1]: Leaving directory `/data2/netcdf/netcdf-3.3.1/src'
> make: *** [ncdump/all] Error 2

It appears that you are missing the Standard C function "memmove()".
This is undoubtably due to the age of your vendor-supplied C compiler
(SC1.0 is quite old).  The GNU C compiler fixes some problems with the
vendor-supplied C header files, but it can't create a function that
doesn't exist.

I see two possible solutions:

    A.  Install the latest C compiler from Sun (SC4.2, I think); or

    B.  Install the freely-available GNU C++ library.  This *should*
        contain the memmove() function in the library "libiberty.a" that
        it installs.  The GNU C++ library can be found at the following
        sites:

            ftp://tron.um.u-tokyo.ac.jp/pub/GNU/prep/
            ftp://ftp.cs.titech.ac.jp/GNU/

        Look for the file "libg++-2.7.2.tar.gz".

When you then attempt to rebuild the netCDF package, do the following:

    1.  Go to the top-level source directory.

    2.  Execute the command "make distclean".

    3.  Remove the file "config.cache" if it exists.

    4.  Set your environment variables as before but add a reference to
        the install library "libiberty.a" to the LIBS variable, e.g.

            
LIBS='/usr2/local/lib/gcc-lib/sparc-sun-sunos4.1.4_JL/2.7.2/libgcc.a 
-L/usr/local/gnu/lib -liberty'

        NOTE: The actual pathname might be different on your system --
        depending on where you install it.

    5.  Re-execute the configure script.

    6.  Proceed normally from here.

--------
Steve Emmerson   <http://www.unidata.ucar.edu>