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970707: netcdf problem
- Subject: 970707: netcdf problem
- Date: Mon, 07 Jul 97 09:40:45 -0600
Peter,
> To: address@hidden
> From: Peter Slootweg <address@hidden>
> Subject: netcdf problem
> Organization: .
> Keywords: 199707041558.JAA06051
In the above message, you wrote:
> I have trouble building the netcdf library that I need to use Matlab 5 on
> cdf files. Chuck Denham advised me to use netcdf-3 instead of netcdf-2
> that I used up to now to build the mexcdf gateway. I would also want
> to take advantage of increased efficiency of netcdf-3.
> But I have tremendous problems building it for SunOs 4.1.3, which is
> installed on our workstations. The only ansi compiler I have available
> is gcc-2.5.8 on a workstation that has the SC1.0 fortran conmpiler.
Those are old compilers (the Fortran compiler is quite old (~10 years)).
I'm not surprised that you're having problems.
Though our policy is to not support old compilation environments, I'll
see what I can do.
>
> The problem arises in the fortran test nf_test. Apparently the library
> libansi.a conflicts with the fortran compiler. Because it is not
> included in the SC1.0 release I took it from another machine (with the
> same architecture), which does not have the gcc installed. I tried to
> compile without $(LIBS) in the nf_test Makefile, but then the loader
> complains about not finding _strerror. in addition to _memmove. As the
> c tests are ok I think that memmove must be right, so strerror must be
> wrong (or incompatible). Maybe that is the problem.
>
> My uname -a is:
>
> SunOS lintilla 4.1.3 6 sun4m
>
> I attach all the files that you ask in INSTALL
>
> which gcc gives
> /usr/local/bin/gcc
> which is a link to /usr/public/gcc-2.5.8/bin/sparc-sun-sunos4.1.3-gcc
>
> which f77
> /usr/lang/f77 which is a link to /usr/lang/SC1.0/f77
>
> c++ was not used.
>
> How can I get a working netcdf-3?
>
> Dr. A. Peter Slootweg
> Dept of Geological Sciences
> University of Durham
> Durham DH1 3LE, U.K.
>
>
>
> - ----------
> X-Sun-Data-Type: default
> X-Sun-Data-Description: default
> X-Sun-Data-Name: VERSION
> X-Sun-Content-Lines: 1
>
> 3.3.1
> - ----------
> X-Sun-Data-Type: default
> X-Sun-Data-Description: default
> X-Sun-Data-Name: configure.out
> X-Sun-Content-Lines: 61
>
> creating cache ./config.cache
> checking for m4... m4
> checking user-defined C compiler "gcc"
> checking C compiler... works
> checking how to make dependencies... cc -M
> configure: warning: Empty CXX variable
> configure: warning: The C++ interface will not be built
> checking how to run the C preprocessor... gcc -E
> checking user-defined FORTRAN compiler "f77"... works
> checking for FORTRAN .F compiler...
> checking if FORTRAN compiler handles *.F files... yes
> checking for C-equivalent to FORTRAN routine "SUB"... sub_
> checking for FORTRAN "byte"... yes
> checking for FORTRAN "integer*2"... yes
> checking if FORTRAN "byte" is C "signed char"... yes
> checking if FORTRAN "byte" is C "short"... no
> checking if FORTRAN "byte" is C "int"... no
> checking if FORTRAN "integer*2" is C "short"... yes
> checking if FORTRAN "integer*2" is C "int"... no
> checking if FORTRAN "integer" is C "int"... yes
> checking if FORTRAN "real" is C "float"... yes
> checking if FORTRAN "doubleprecision" is C "double"... yes
> checking for FORTRAN-equivalent to netCDF "byte"... byte
> checking for FORTRAN-equivalent to netCDF "short"... integer*2
> checking for math library
> checking for -lc... no
> checking for -lm... yes
> checking for ar... ar
> checking for ranlib... ranlib
> checking for stdlib.h... yes
> checking for sys/types.h... yes
> checking for strerror... yes
> checking for ftruncate... yes
> checking for st_blksize in struct stat... yes
> checking whether cross-compiling... no
> checking for IEEE floating point format... yes
> checking for ANSI C header files... no
> checking for size_t... yes
> checking for off_t... yes
> checking for ssize_t... no
> checking for ptrdiff_t... yes
> checking for uchar... no
> checking whether char is unsigned... no
> checking whether byte ordering is bigendian... yes
> checking size of short... 2
> checking size of int... 4
> checking size of long... 4
> checking size of float... 4
> checking size of double... 8
> checking size of off_t... 4
> checking size of size_t... 4
> checking for catman... no
> checking for makewhatis... no
> checking for manual-page index command...
> checking binary distribution directory... /home/ftp/pub/binary/dummy_system
> updating cache ./config.cache
> creating ./config.status
> creating macros.make
> udcreating fortran/nfconfig.inc
> fortran/nfconfig.inc is unchanged
> creating libsrc/ncconfig.h
> - ----------
> X-Sun-Data-Type: default
> X-Sun-Data-Description: default
> X-Sun-Data-Name: make.out
> X-Sun-Content-Lines: 67
>
>
> Making `all' in directory
> /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src/libsrc
>
> gcc -c -g -I. -DNDEBUG attr.c
> gcc -c -g -I. -DNDEBUG dim.c
> gcc -c -g -I. -DNDEBUG error.c
> gcc -c -g -I. -DNDEBUG -DVERSION=`cat ../VERSION` libvers.c
> gcc -c -g -I. -DNDEBUG nc.c
> gcc -c -g -I. -DNDEBUG ncio.c
> gcc -c -g -I. -DNDEBUG ncx.c
> gcc -c -g -I. -DNDEBUG putget.c
> gcc -c -g -I. -DNDEBUG string.c
> gcc -c -g -I. -DNDEBUG v1hpg.c
> gcc -c -g -I. -DNDEBUG v2i.c
> gcc -c -g -I. -DNDEBUG var.c
> ar cru libnetcdf.a attr.o dim.o error.o libvers.o nc.o ncio.o ncx.o
> putget.o string.o v1hpg.o v2i.o var.o
> ranlib libnetcdf.a
>
> Returning to directory /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src
>
>
> Making `all' in directory
> /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src/fortran
>
> gcc -c -g -I../libsrc -DNDEBUG fort-attio.c
> gcc -c -g -I../libsrc -DNDEBUG fort-control.c
> gcc -c -g -I../libsrc -DNDEBUG fort-dim.c
> gcc -c -g -I../libsrc -DNDEBUG fort-genatt.c
> gcc -c -g -I../libsrc -DNDEBUG fort-geninq.c
> gcc -c -g -I../libsrc -DNDEBUG fort-genvar.c
> gcc -c -g -I../libsrc -DNDEBUG fort-lib.c
> gcc -c -g -I../libsrc -DNDEBUG fort-misc.c
> gcc -c -g -I../libsrc -DNDEBUG fort-v2compat.c
> gcc -c -g -I../libsrc -DNDEBUG fort-vario.c
> gcc -c -g -I../libsrc -DNDEBUG fort-var1io.c
> gcc -c -g -I../libsrc -DNDEBUG fort-varaio.c
> gcc -c -g -I../libsrc -DNDEBUG fort-varmio.c
> gcc -c -g -I../libsrc -DNDEBUG fort-varsio.c
> ar cru ../libsrc/libnetcdf.a fort-attio.o fort-control.o fort-dim.o
> fort-genatt.o fort-geninq.o fort-genvar.o fort-lib.o fort-misc.o
> fort-v2compat.o fort-vario.o fort-var1io.o fort-varaio.o
> fort-varmio.o fort-varsio.o
> ranlib ../libsrc/libnetcdf.a
>
> Returning to directory /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src
>
>
> Making `all' in directory
> /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src/ncdump
>
> gcc -c -g -I../libsrc -DNDEBUG ncdump.c
> gcc -c -g -I../libsrc -DNDEBUG vardata.c
> gcc -c -g -I../libsrc -DNDEBUG dumplib.c
> gcc -o ncdump -g ncdump.o vardata.o dumplib.o -L../libsrc -lnetcdf
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi
>
> Returning to directory /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src
>
>
> Making `all' in directory
> /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src/ncgen
>
> gcc -c -g -I../libsrc -I. -DNDEBUG main.c
> gcc -c -g -I../libsrc -I. -DNDEBUG load.c
> gcc -c -g -I../libsrc -I. -DNDEBUG ncgentab.c
> gcc -c -g -I../libsrc -I. -DNDEBUG escapes.c
> gcc -c -g -I../libsrc -I. -DNDEBUG getfill.c
> gcc -c -g -I../libsrc -I. -DNDEBUG init.c
> gcc -c -g -I../libsrc -I. -DNDEBUG genlib.c
> gcc -o ncgen -g main.o load.o ncgentab.o escapes.o getfill.o init.o
> genlib.o ../libsrc/libnetcdf.a -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi
>
> Returning to directory /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src
>
> Not making `cxx/all' because no C++ compiler
> - ----------
> X-Sun-Data-Type: default
> X-Sun-Data-Description: default
> X-Sun-Data-Name: maketest.out
> X-Sun-Content-Lines: 499
>
>
> Making `test' in directory
> /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src/libsrc
>
> gcc -c -g -I. -DNDEBUG t_nc.c
> ar cru libnetcdf.a attr.o dim.o error.o libvers.o nc.o ncio.o ncx.o
> putget.o string.o v1hpg.o v2i.o var.o
> ranlib libnetcdf.a
> gcc -o t_nc -g t_nc.o -L. -lnetcdf -L/ps/ridge/software/whips/netcdf-3.3.1
> -lansi
> ./t_nc
> dimrename: IXX
> nc_close ret = 0
>
> reopen id = 3 for filename test.nc
> NC done
> GATTR VAR VATTR
> VATTR
> VATTR
> VATTR
> VATTR
> VATTR
> fill_seq indices 1 2 3 75.000000 != 2.718282
> Done
> got val = 3.250000
> got val = 0.000000
> got val = 2.718282
> got val = 82555
> got val = 97
> got NC_CHAR val = A (0x41)
> got NC_CHAR val = B (0x42)
> got NC_CHAR val = "The red death had long devastated the country."
> got val = A (0x41)
> got val = B (0x42)
> got val = "The red death had long devastated the country."
> got vals = 0.000000 ... 447.000000
> re nc_close ret = 0
> cmp test.nc test_nc.sav
> *** Success ***
>
> Returning to directory /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src
>
>
> Making `test' in directory
> /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src/nctest
>
> gcc -c -g -I../libsrc -DNDEBUG varget.c
> gcc -c -g -I../libsrc -DNDEBUG vargetg.c
> gcc -c -g -I../libsrc -DNDEBUG varput.c
> gcc -c -g -I../libsrc -DNDEBUG varputg.c
> gcc -c -g -I../libsrc -DNDEBUG vardef.c
> gcc -c -g -I../libsrc -DNDEBUG vartests.c
> gcc -c -g -I../libsrc -DNDEBUG vputget.c
> gcc -c -g -I../libsrc -DNDEBUG vputgetg.c
> gcc -c -g -I../libsrc -DNDEBUG driver.c
> gcc -c -g -I../libsrc -DNDEBUG cdftests.c
> gcc -c -g -I../libsrc -DNDEBUG dimtests.c
> gcc -c -g -I../libsrc -DNDEBUG rec.c
> gcc -c -g -I../libsrc -DNDEBUG atttests.c
> gcc -c -g -I../libsrc -DNDEBUG misctest.c
> gcc -c -g -I../libsrc -DNDEBUG add.c
> gcc -c -g -I../libsrc -DNDEBUG error.c
> gcc -c -g -I../libsrc -DNDEBUG emalloc.c
> gcc -c -g -I../libsrc -DNDEBUG val.c
> gcc -c -g -I../libsrc -DNDEBUG slabs.c
> gcc -o nctest -g varget.o vargetg.o varput.o varputg.o vardef.o vartests.o
> vputget.o vputgetg.o driver.o cdftests.o dimtests.o rec.o atttests.o
> misctest.o add.o error.o emalloc.o val.o slabs.o -L../libsrc -lnetcdf
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi
> ./nctest
> *** Testing nccreate ... ok ***
> *** Testing ncopen ... ok ***
> *** Testing ncredef ... ok ***
> *** Testing ncendef ... ok ***
> *** Testing ncclose ... ok ***
> *** Testing ncinquire ... ok ***
> *** Testing ncsync ... ok ***
> *** Testing ncabort ... ok ***
> *** Testing ncdimdef ... ok ***
> *** Testing ncdimid ... ok ***
> *** Testing ncdiminq ... ok ***
> *** Testing ncdimrename ... ok ***
> *** Testing ncvardef ... ok ***
> *** Testing ncvarid ... ok ***
> *** Testing ncvarinq ... ok ***
> *** Testing ncvarput1 ... ok ***
> *** Testing ncvarget1 ... ok ***
> *** Testing ncvarput ... ok ***
> *** Testing ncvarget ... ok ***
> *** Testing ncvarputg ... ok ***
> *** Testing ncvargetg ... ok ***
> *** Testing ncrecinq ... ok ***
> *** Testing ncrecput ... ok ***
> *** Testing ncrecget ... ok ***
> *** Testing ncvarrename ... ok ***
> *** Testing ncattput ... ok ***
> *** Testing ncattinq ... ok ***
> *** Testing ncattget ... ok ***
> *** Testing ncattcopy ... ok ***
> *** Testing ncattname ... ok ***
> *** Testing ncattrename ... ok ***
> *** Testing ncattdel ... ok ***
> *** Testing nctypelen ... ok ***
> cmp testfile.nc testfile_nc.sav
>
> Returning to directory /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src
>
>
> Making `test' in directory
> /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src/nc_test
>
> gcc -c -g -I../libsrc -DNDEBUG nc_test.c
> gcc -c -g -I../libsrc -DNDEBUG error.c
> gcc -c -g -I../libsrc -DNDEBUG test_get.c
> gcc -c -g -I../libsrc -DNDEBUG test_put.c
> gcc -c -g -I../libsrc -DNDEBUG test_read.c
> gcc -c -g -I../libsrc -DNDEBUG test_write.c
> gcc -c -g -I../libsrc -DNDEBUG util.c
> gcc -o nc_test -g nc_test.o error.o test_get.o test_put.o test_read.o
> test_write.o util.o -L../libsrc -lnetcdf -lm
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi
> ./nc_test -c
> ./nc_test
> *** Testing nc_strerror ... ok
> *** Testing nc_open ... ok
> *** Testing nc_close ... ok
> *** Testing nc_inq ... ok
> *** Testing nc_inq_dimid ... ok
> *** Testing nc_inq_dim ... ok
> *** Testing nc_inq_dimlen ... ok
> *** Testing nc_inq_dimname ... ok
> *** Testing nc_inq_varid ... ok
> *** Testing nc_inq_var ... ok
> *** Testing nc_inq_natts ... ok
> *** Testing nc_inq_ndims ... ok
> *** Testing nc_inq_nvars ... ok
> *** Testing nc_inq_unlimdim ... ok
> *** Testing nc_inq_vardimid ... ok
> *** Testing nc_inq_varname ... ok
> *** Testing nc_inq_varnatts ... ok
> *** Testing nc_inq_varndims ... ok
> *** Testing nc_inq_vartype ... ok
> *** Testing nc_get_var_text ... 179 good comparisons. ok
> *** Testing nc_get_var_uchar ... 264 good comparisons. ok
> *** Testing nc_get_var_schar ... 269 good comparisons. ok
> *** Testing nc_get_var_short ... 682 good comparisons. ok
> *** Testing nc_get_var_int ... 1189 good comparisons. ok
> *** Testing nc_get_var_long ... 1189 good comparisons. ok
> *** Testing nc_get_var_float ... 1194 good comparisons. ok
> *** Testing nc_get_var_double ... 1207 good comparisons. ok
> *** Testing nc_get_var1_text ... 179 good comparisons. ok
> *** Testing nc_get_var1_uchar ... 264 good comparisons. ok
> *** Testing nc_get_var1_schar ... 269 good comparisons. ok
> *** Testing nc_get_var1_short ... 682 good comparisons. ok
> *** Testing nc_get_var1_int ... 1189 good comparisons. ok
> *** Testing nc_get_var1_long ... 1189 good comparisons. ok
> *** Testing nc_get_var1_float ... 1194 good comparisons. ok
> *** Testing nc_get_var1_double ... 1207 good comparisons. ok
> *** Testing nc_get_vara_text ... 179 good comparisons. ok
> *** Testing nc_get_vara_uchar ... 264 good comparisons. ok
> *** Testing nc_get_vara_schar ... 269 good comparisons. ok
> *** Testing nc_get_vara_short ... 682 good comparisons. ok
> *** Testing nc_get_vara_int ... 1189 good comparisons. ok
> *** Testing nc_get_vara_long ... 1189 good comparisons. ok
> *** Testing nc_get_vara_float ... 1194 good comparisons. ok
> *** Testing nc_get_vara_double ... 1207 good comparisons. ok
> *** Testing nc_get_vars_text ... 179 good comparisons. ok
> *** Testing nc_get_vars_uchar ... 264 good comparisons. ok
> *** Testing nc_get_vars_schar ... 269 good comparisons. ok
> *** Testing nc_get_vars_short ... 682 good comparisons. ok
> *** Testing nc_get_vars_int ... 1189 good comparisons. ok
> *** Testing nc_get_vars_long ... 1189 good comparisons. ok
> *** Testing nc_get_vars_float ... 1194 good comparisons. ok
> *** Testing nc_get_vars_double ... 1207 good comparisons. ok
> *** Testing nc_get_varm_text ... 179 good comparisons. ok
> *** Testing nc_get_varm_uchar ... 264 good comparisons. ok
> *** Testing nc_get_varm_schar ... 269 good comparisons. ok
> *** Testing nc_get_varm_short ... 682 good comparisons. ok
> *** Testing nc_get_varm_int ... 1189 good comparisons. ok
> *** Testing nc_get_varm_long ... 1189 good comparisons. ok
> *** Testing nc_get_varm_float ... 1194 good comparisons. ok
> *** Testing nc_get_varm_double ... 1207 good comparisons. ok
> *** Testing nc_get_att_text ... 7 good comparisons. ok
> *** Testing nc_get_att_uchar ... 5 good comparisons. ok
> *** Testing nc_get_att_schar ... 7 good comparisons. ok
> *** Testing nc_get_att_short ... 15 good comparisons. ok
> *** Testing nc_get_att_int ... 19 good comparisons. ok
> *** Testing nc_get_att_long ... 19 good comparisons. ok
> *** Testing nc_get_att_float ... 21 good comparisons. ok
> *** Testing nc_get_att_double ... 27 good comparisons. ok
> *** Testing nc_inq_att ... ok
> *** Testing nc_inq_attname ... ok
> *** Testing nc_inq_attid ... ok
> *** Testing nc_inq_attlen ... ok
> *** Testing nc_inq_atttype ... ok
> *** Testing nc_create ... ok
> *** Testing nc_redef ... 1386 good comparisons. 34 good comparisons. ok
> *** Testing nc_enddef ... 1386 good comparisons. 34 good comparisons. ok
> *** Testing nc_sync ... 34 good comparisons. 1386 good comparisons. ok
> *** Testing nc_abort ... 1386 good comparisons. 34 good comparisons. ok
> *** Testing nc_def_dim ... ok
> *** Testing nc_rename_dim ... ok
> *** Testing nc_def_var ... ok
> *** Testing nc_put_var_text ... 179 good comparisons. ok
> *** Testing nc_put_var_uchar ... 264 good comparisons. ok
> *** Testing nc_put_var_schar ... 269 good comparisons. ok
> *** Testing nc_put_var_short ... 682 good comparisons. ok
> *** Testing nc_put_var_int ... 1189 good comparisons. ok
> *** Testing nc_put_var_long ... 1189 good comparisons. ok
> *** Testing nc_put_var_float ... 1194 good comparisons. ok
> *** Testing nc_put_var_double ... 1207 good comparisons. ok
> *** Testing nc_put_var1_text ... 179 good comparisons. ok
> *** Testing nc_put_var1_uchar ... 264 good comparisons. ok
> *** Testing nc_put_var1_schar ... 269 good comparisons. ok
> *** Testing nc_put_var1_short ... 682 good comparisons. ok
> *** Testing nc_put_var1_int ... 1189 good comparisons. ok
> *** Testing nc_put_var1_long ... 1189 good comparisons. ok
> *** Testing nc_put_var1_float ... 1194 good comparisons. ok
> *** Testing nc_put_var1_double ... 1207 good comparisons. ok
> *** Testing nc_put_vara_text ... 179 good comparisons. ok
> *** Testing nc_put_vara_uchar ... 264 good comparisons. ok
> *** Testing nc_put_vara_schar ... 269 good comparisons. ok
> *** Testing nc_put_vara_short ... 682 good comparisons. ok
> *** Testing nc_put_vara_int ... 1189 good comparisons. ok
> *** Testing nc_put_vara_long ... 1189 good comparisons. ok
> *** Testing nc_put_vara_float ... 1194 good comparisons. ok
> *** Testing nc_put_vara_double ... 1207 good comparisons. ok
> *** Testing nc_put_vars_text ... 179 good comparisons. ok
> *** Testing nc_put_vars_uchar ... 264 good comparisons. ok
> *** Testing nc_put_vars_schar ... 269 good comparisons. ok
> *** Testing nc_put_vars_short ... 682 good comparisons. ok
> *** Testing nc_put_vars_int ... 1189 good comparisons. ok
> *** Testing nc_put_vars_long ... 1189 good comparisons. ok
> *** Testing nc_put_vars_float ... 1194 good comparisons. ok
> *** Testing nc_put_vars_double ... 1207 good comparisons. ok
> *** Testing nc_put_varm_text ... 179 good comparisons. ok
> *** Testing nc_put_varm_uchar ... 264 good comparisons. ok
> *** Testing nc_put_varm_schar ... 269 good comparisons. ok
> *** Testing nc_put_varm_short ... 682 good comparisons. ok
> *** Testing nc_put_varm_int ... 1189 good comparisons. ok
> *** Testing nc_put_varm_long ... 1189 good comparisons. ok
> *** Testing nc_put_varm_float ... 1194 good comparisons. ok
> *** Testing nc_put_varm_double ... 1207 good comparisons. ok
> *** Testing nc_rename_var ... 1386 good comparisons. ok
> *** Testing nc_put_att_text ... 7 good comparisons. ok
> *** Testing nc_put_att_uchar ... 5 good comparisons. ok
> *** Testing nc_put_att_schar ... 7 good comparisons. ok
> *** Testing nc_put_att_short ... 15 good comparisons. ok
> *** Testing nc_put_att_int ... 19 good comparisons. ok
> *** Testing nc_put_att_long ... 19 good comparisons. ok
> *** Testing nc_put_att_float ... 21 good comparisons. ok
> *** Testing nc_put_att_double ... 27 good comparisons. ok
> *** Testing nc_copy_att ... 34 good comparisons. ok
> *** Testing nc_rename_att ... 34 good comparisons. ok
> *** Testing nc_del_att ... ok
> *** Testing nc_set_fill ... 2796 good comparisons. ok
>
> Total number of failures: 0
> *** Success ***
>
> Returning to directory /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src
>
>
> Making `test' in directory
> /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src/fortran
>
> + f77 -c -g -w ftest.F
> /tmp/cpp.29962.0.f:
> MAIN ftest:
> tncacpy:
> tncadel:
> tncagt:
> tncapt:
> BLOCK DATA:
> tncddef:
> tncinq:
> tncredf:
> tncvdef:
> tncvgt:
> tncvgt1:
> tncvpt:
> tncvpt1:
> tfills:
> ar cru ../libsrc/libnetcdf.a fort-attio.o fort-control.o fort-dim.o
> fort-genatt.o fort-geninq.o fort-genvar.o fort-lib.o fort-misc.o
> fort-v2compat.o fort-vario.o fort-var1io.o fort-varaio.o
> fort-varmio.o fort-varsio.o
> ranlib ../libsrc/libnetcdf.a
> f77 -o ftest -g -w ftest.o ../libsrc/libnetcdf.a
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi
> ./ftest
> *** Testing nccre ...
> *** Testing ncddef ...
> *** Testing ncvdef ...
> *** Testing ncapt, ncaptc ...
> *** Testing ncclos ...
> *** Testing ncvpt1 ...
> *** Testing ncvgt1 ...
> *** Testing ncvpt ...
> *** Testing ncopn, ncinq, ncdinq, ncvinq, ncanam, ncainq ...
> *** Testing ncvgt, ncvgtc ...
> *** Testing ncagt, ncagtc ...
> *** Testing ncredf, ncdren, ncvren, ncaren, ncendf ...
> *** Testing ncacpy ...
> *** Testing ncadel ...
> *** Testing fill values ...
>
> Returning to directory /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src
>
>
> Making `test' in directory
> /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src/nf_test
>
> + f77 -c -g -w test_get.F
> /tmp/cpp.00108.0.f:
> test_nf_get_var1_text:
> test_nf_get_var1_int1:
> test_nf_get_var1_int2:
> test_nf_get_var1_int:
> test_nf_get_var1_real:
> test_nf_get_var1_double:
> test_nf_get_var_text:
> test_nf_get_var_int1:
> test_nf_get_var_int2:
> test_nf_get_var_int:
> test_nf_get_var_real:
> test_nf_get_var_double:
> test_nf_get_vara_text:
> test_nf_get_vara_int1:
> test_nf_get_vara_int2:
> test_nf_get_vara_int:
> test_nf_get_vara_real:
> test_nf_get_vara_double:
> test_nf_get_vars_text:
> test_nf_get_vars_int1:
> test_nf_get_vars_int2:
> test_nf_get_vars_int:
> test_nf_get_vars_real:
> test_nf_get_vars_double:
> test_nf_get_varm_text:
> test_nf_get_varm_int1:
> test_nf_get_varm_int2:
> test_nf_get_varm_int:
> test_nf_get_varm_real:
> test_nf_get_varm_double:
> test_nf_get_att_text:
> test_nf_get_att_int1:
> test_nf_get_att_int2:
> test_nf_get_att_int:
> test_nf_get_att_real:
> test_nf_get_att_double:
> + f77 -c -g -w test_put.F
> /tmp/cpp.00130.0.f:
> hash_text:
> hash_int1:
> hash_int2:
> hash_int:
> hash_real:
> hash_double:
> check_vars_text:
> check_vars_int1:
> check_vars_int2:
> check_vars_int:
> check_vars_real:
> check_vars_double:
> check_atts_text:
> check_atts_int1:
> check_atts_int2:
> check_atts_int:
> check_atts_real:
> check_atts_double:
> test_nf_put_var1_text:
> test_nf_put_var1_int1:
> test_nf_put_var1_int2:
> test_nf_put_var1_int:
> test_nf_put_var1_real:
> test_nf_put_var1_double:
> test_nf_put_var_text:
> test_nf_put_var_int1:
> test_nf_put_var_int2:
> test_nf_put_var_int:
> test_nf_put_var_real:
> test_nf_put_var_double:
> test_nf_put_vara_text:
> test_nf_put_vara_int1:
> test_nf_put_vara_int2:
> test_nf_put_vara_int:
> test_nf_put_vara_real:
> test_nf_put_vara_double:
> test_nf_put_vars_text:
> test_nf_put_vars_int1:
> test_nf_put_vars_int2:
> test_nf_put_vars_int:
> test_nf_put_vars_real:
> test_nf_put_vars_double:
> test_nf_put_varm_text:
> test_nf_put_varm_int1:
> test_nf_put_varm_int2:
> test_nf_put_varm_int:
> test_nf_put_varm_real:
> test_nf_put_varm_double:
> test_nf_put_att_text:
> test_nf_put_att_int1:
> test_nf_put_att_int2:
> test_nf_put_att_int:
> test_nf_put_att_real:
> test_nf_put_att_double:
> + f77 -c -g -w nf_error.F
> /tmp/cpp.00142.0.f:
> error:
> errori:
> errord:
> errorc:
> errore:
> + f77 -c -g -w nf_test.F
> /tmp/cpp.00150.0.f:
> usage:
> test:
> MAIN nf_test:
> + f77 -c -g -w test_read.F
> /tmp/cpp.00157.0.f:
> test_nf_strerror:
> test_nf_open:
> test_nf_close:
> test_nf_inq:
> test_nf_inq_natts:
> test_nf_inq_ndims:
> test_nf_inq_nvars:
> test_nf_inq_unlimdim:
> test_nf_inq_dimid:
> test_nf_inq_dim:
> test_nf_inq_dimlen:
> test_nf_inq_dimname:
> test_nf_inq_varid:
> test_nf_inq_var:
> test_nf_inq_vardimid:
> test_nf_inq_varname:
> test_nf_inq_varnatts:
> test_nf_inq_varndims:
> test_nf_inq_vartype:
> test_nf_inq_att:
> test_nf_inq_attlen:
> test_nf_inq_atttype:
> test_nf_inq_attname:
> test_nf_inq_attid:
> + f77 -c -g -w test_write.F
> /tmp/cpp.00166.0.f:
> test_nf_create:
> test_nf_redef:
> test_nf_enddef:
> test_nf_sync:
> test_nf_abort:
> test_nf_def_dim:
> test_nf_rename_dim:
> test_nf_def_var:
> test_nf_rename_var:
> test_nf_copy_att:
> test_nf_rename_att:
> test_nf_del_att:
> test_nf_set_fill:
> + f77 -c -g -w util.F
> /tmp/cpp.00172.0.f:
> print_nok:
> inrange:
> inrange_uchar:
> inrange_float:
> inrange3:
> equal:
> int_vec_eq:
> roll:
> index2ncindexes:
> index2indexes:
> indexes2index:
> hash:
> hash4:
> char2type:
> init_dims:
> init_gatts:
> prod:
> init_gvars:
> def_dims:
> def_vars:
> put_atts:
> put_vars:
> write_file:
> check_dims:
> check_vars:
> check_atts:
> check_file:
> varid:
> natts:
> att_name:
> att_type:
> att_len:
> internal_min:
> internal_max:
> external_min:
> external_max:
> in_internal_range:
> len_trim:
> gcc -c -g -DNDEBUG fortlib.c
> f77 -o nf_test -g -w test_get.o test_put.o nf_error.o
> nf_test.o test_read.o test_write.o util.o fortlib.o
> ../libsrc/libnetcdf.a -lm -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi
> ./nf_test -c
> *** Bus Error = signal 10 code 2
> Traceback has been recorded in file:
>
> /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src/nf_test/./nf_test.trace
> Note: Line numbers for system and library calls may be incorrect
> *** Abort
> make: Fatal error: Command failed for target `test.nc'
> Current working directory
> /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src/nf_test
> *** Error code 1
> make: Fatal error: Command failed for target `subdir_target'
> Current working directory /tmp_mnt/ps/ridge/software/whips/netcdf-3.3.1/src
> *** Error code 1
> make: Fatal error: Command failed for target `nf_test/test'
I'm afraid I couldn't see what the problem is from the above. It might
be possible to pinpoint the problem by exchanging email, but that
process promises to be fairly time-consuming.
May I suggest some potentially faster alternatives:
1. Contact your Sun representative and see about obtaining the
latest C and Fortran compilers (SC3.0.1, I believe). Here in
the States, the cost to an educational institution is only about
$100 per license.
2. Obtain the latest C and Fortran compilers from Sun on a
trial-use basis for free. In the U.S., these compilers are
available from the following URL:
http://www.sun.com/workshop/tnb/sparc1x/
You might have a similar URL in the UK.
The compilers will work for 30 days (plenty of time to build the
netCDF packge) after which time they'll stop working until you
purchase a license for them from Sun.
Please let me know if this helps.
> - ----------
> X-Sun-Data-Type: default
> X-Sun-Data-Description: default
> X-Sun-Data-Name: config.log
> X-Sun-Content-Lines: 93
>
> This file contains any messages produced by compilers while
> running configure, to aid debugging if configure makes a mistake.
>
> configure:1017: gcc -c -g -DNDEBUG conftest.c 1>&5
> configure:1217: gcc -E -DNDEBUG conftest.c >/dev/null 2>conftest.out
> configure:1316: f77 -c -g -w conftest.f
> conftest.f:
> MAIN:
> configure:1415: f77 -o conftest -g -w conftest.F
> /tmp/cpp.28331.0.f:
> MAIN:
> configure:1456: f77 -c -g -w conftest.f
> conftest.f:
> MAIN:
> configure:1491: f77 -c -g -w conftest.f
> conftest.f:
> sub:
> configure:1514: f77 -c -g -w conftest.f
> conftest.f:
> sub:
> configure:1548: gcc -c -DNDEBUG -g conftest.c
> configure:1550: f77 -o conftest -g -w conftestf.f conftest.o
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi
> conftestf.f:
> MAIN:
> configure:1552: ./conftest
> configure:1590: gcc -c -DNDEBUG -g conftest.c
> configure:1592: f77 -o conftest -g -w conftestf.f conftest.o
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi
> conftestf.f:
> MAIN:
> configure:1594: ./conftest
> configure:1632: gcc -c -DNDEBUG -g conftest.c
> configure:1634: f77 -o conftest -g -w conftestf.f conftest.o
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi
> conftestf.f:
> MAIN:
> configure:1636: ./conftest
> configure:1678: gcc -c -DNDEBUG -g conftest.c
> configure:1680: f77 -o conftest -g -w conftestf.f conftest.o
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi
> conftestf.f:
> MAIN:
> configure:1682: ./conftest
> configure:1720: gcc -c -DNDEBUG -g conftest.c
> configure:1722: f77 -o conftest -g -w conftestf.f conftest.o
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi
> conftestf.f:
> MAIN:
> configure:1724: ./conftest
> configure:1764: gcc -c -DNDEBUG -g conftest.c
> configure:1766: f77 -o conftest -g -w conftestf.f conftest.o
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi
> conftestf.f:
> MAIN:
> configure:1768: ./conftest
> configure:1806: gcc -c -DNDEBUG -g conftest.c
> configure:1808: f77 -o conftest -g -w conftestf.f conftest.o
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi
> conftestf.f:
> MAIN:
> configure:1810: ./conftest
> configure:1848: gcc -c -DNDEBUG -g conftest.c
> configure:1850: f77 -o conftest -g -w conftestf.f conftest.o
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi
> conftestf.f:
> MAIN:
> configure:1852: ./conftest
> configure:1882: f77 -c -g -w conftest.f
> conftest.f:
> MAIN:
> configure:1903: f77 -c -g -w conftest.f
> conftest.f:
> MAIN:
> configure:1943: gcc -o conftest -g -DNDEBUG conftest.c -lc
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi 1>&5
> ld: Undefined symbol
> _tanh
> collect2: ld returned 2 exit status
> configure:1977: gcc -o conftest -g -DNDEBUG conftest.c -lm
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi 1>&5
> configure:2072: gcc -E -DNDEBUG conftest.c >/dev/null 2>conftest.out
> configure:2106: gcc -E -DNDEBUG conftest.c >/dev/null 2>conftest.out
> configure:2156: gcc -o conftest -g -DNDEBUG conftest.c
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi 1>&5
> configure:2204: gcc -o conftest -g -DNDEBUG conftest.c
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi 1>&5
> configure:2238: gcc -c -g -DNDEBUG conftest.c 1>&5
> configure:2270: gcc -o conftest -g -DNDEBUG conftest.c
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi 1>&5
> configure:2322: gcc -o conftest -g -DNDEBUG conftest.c
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi 1>&5
> configure:2351: gcc -E -DNDEBUG conftest.c >/dev/null 2>conftest.out
> configure:2672: gcc -c -g -DNDEBUG conftest.c 1>&5
> configure: In function `t':
> configure:2667: `bogus' undeclared (first use this function)
> configure:2667: (Each undeclared identifier is reported only once
> configure:2667: for each function it appears in.)
> configure:2667: parse error before `endian'
> configure:2718: gcc -o conftest -g -DNDEBUG conftest.c
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi 1>&5
> configure:2756: gcc -o conftest -g -DNDEBUG conftest.c
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi 1>&5
> configure:2790: gcc -o conftest -g -DNDEBUG conftest.c
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi 1>&5
> configure:2824: gcc -o conftest -g -DNDEBUG conftest.c
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi 1>&5
> configure:2858: gcc -o conftest -g -DNDEBUG conftest.c
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi 1>&5
> configure:2892: gcc -o conftest -g -DNDEBUG conftest.c
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi 1>&5
> configure:2930: gcc -o conftest -g -DNDEBUG conftest.c
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi 1>&5
> configure:2968: gcc -o conftest -g -DNDEBUG conftest.c
> -L/ps/ridge/software/whips/netcdf-3.3.1 -lansi 1>&5
>
>
> ------- End of Forwarded Message
--------
Steve Emmerson <http://www.unidata.ucar.edu>
