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[netCDF #CZA-818826]: regarding netcdf-4.3.3.1 build failure

The first thing you need to do is to rebuild hdf4 with the --disable-netcdf
flag. Below you appear to be building with --enable-netcdf, which is a known
cause of failures.


> Dear Sir,
> I am facing errors while trying to build netcdf-4.3.3.1 with hdf4 &
> parallel support!.
> i had configured using:-
> 
> 
> 
> *LD_LIBRARY_PATH=/root/Downloads/COMMON/lib/:$LD_LIBRARY_PATH CC=mpicc
> CFLAGS="-fPIC" LDFLAGS="-L/root/Downloads/COMMON/lib  -lhdf5_fortran
> -lhdf5_hl -lhdf5hl_fortran  -lhdf5 -lmfhdf -ldf -lsz -lz -ljpeg "
> CPPFLAGS="-I/root/Downloads/COMMON/include" ./configure
> --prefix="/root/Downloads/COMMON" --enable-netcdf-4 --enable-hdf4
> --enable-pnetcdf --enable-parallel-tests *
> i am getting :
> 
> checking for H5Z_SZIP... yes
> checking whether parallel I/O features are to be included... yes
> checking for library containing SZ_Compress... none required
> checking mfhdf.h usability... yes
> checking mfhdf.h presence... yes
> checking for mfhdf.h... yes
> checking for Hclose in -ldf... no
> configure: error: Can't find or link to the hdf4 df library. See config.log
> for errors.
> 
> My contents of COMMON/lib are :-
> 
> ls /root/Downloads/COMMON/lib/
> *libdf.a  *           libhdf5_fortran.so.10
> libhdf5hl_fortran.so.10.0.0  libhdf5.so         libsz.la
> libz.so.1.2.8
> *libdf.la <http://libdf.la> *           libhdf5_fortran.so.10.0.0
> libhdf5_hl.la                libhdf5.so.10      libsz.so        pkgconfig
> libhdf4.settings    libhdf5_hl.a               libhdf5_hl.so
> libhdf5.so.10.0.0  libsz.so.2
> libhdf5.a           libhdf5hl_fortran.a        libhdf5_hl.so.10
> libjpeg.a          libsz.so.2.0.0
> libhdf5_fortran.a   libhdf5hl_fortran.la       libhdf5_hl.so.10.0.0
> libmfhdf.a         libz.a
> libhdf5_fortran.la  libhdf5hl_fortran.so       libhdf5.la
> libmfhdf.la        libz.so
> libhdf5_fortran.so  libhdf5hl_fortran.so.10    libhdf5.settings
> libsz.a            libz.so.1
> 
> attached log:  *config_hdf4_1.log*
> 
> also i tried omitting the *--enable-hdf4* :
> * LD_LIBRARY_PATH=/root/Downloads/COMMON/lib/:$LD_LIBRARY_PATH CC=mpicc
> CFLAGS="-fPIC" LDFLAGS="-L/root/Downloads/COMMON/lib  -lhdf5_fortran
> -lhdf5_hl -lhdf5hl_fortran  -lhdf5 -lmfhdf -ldf -lsz -lz -ljpeg "
> CPPFLAGS="-I/root/Downloads/COMMON/include" ./configure
> --prefix="/root/Downloads/COMMON" --enable-netcdf-4 --enable-pnetcdf*
> 
> now i end up with :
> 
> checking for library containing H5Fflush... none required
> checking for library containing H5DSis_scale... none required
> checking hdf5.h usability... yes
> checking hdf5.h presence... yes
> checking for hdf5.h... yes
> checking for H5Pget_fapl_mpiposix... no
> checking for H5Pget_fapl_mpio... yes
> checking for H5Pset_deflate... yes
> checking for H5Z_SZIP... yes
> checking whether parallel I/O features are to be included... yes
> checking for library containing SZ_Compress... none required
> checking for ncmpi_create in -lpnetcdf... no
> configure: error: Cannot link to pnetcdf library, yet --enable-pnetcdf was
> used.
> 
> attached log: *par_config.log*.
> 
> So, if i keep only --enable-netcdf-4 flag , the *configure* ,*make* &* make
> install* succeeds.
> 
> My objective if to build netcdf with parallel & hdf4 support !
> Where am i going wrong here ? Any hint/help in this regard will be very
> fruitful to me.
> 
> 
> *P.S.*
> I had installed HDF5 using following configuration:
> * LD_LIBRARY_PATH=/root/Downloads/COMMON/lib/:$LD_LIBRARY_PATH CC=mpicc
> FC=mpifort CXX=mpicxx CFLAGS="-fPIC"
> LDFLAGS="-L/root/Downloads/COMMON/lib/" LIBS="-lsz -lz -ljpeg"
> CPPFLAGS="-I/root/Downloads/COMMON/include"  FCFLAGS="-fPIC"   ./configure
> --prefix=/root/Downloads/COMMON/ --with-zlib=/root/Downloads/COMMON
> --with-szlib=/root/Downloads/COMMON --enable-fortran  --enable-parallel*
> 
> and hdf4 via :
> *LD_LIBRARY_PATH=/root/Downloads/COMMON/lib:$LD_LIBRARY_PATH CC="gcc"
> CFLAGS="-fPIC" LDFLAGS="-L/root/Downloads/COMMON/lib -lsz -lz -ljpeg"
> CPPFLAGS="-I/root/Downloads/COMMON/include/" CXX="g++" CXXFLAGS="-fPIC"
> F77="gfortran" FFLAGS="-fPIC"  ./configure --prefix=/root/Downloads/COMMON
> --with-zlib=/root/Downloads/COMMON --with-szlib=/root/Downloads/COMMON
> --with-jpeg=/root/Downloads/COMMON --enable-fortran --enable-netcdf*
> 
> 
> Eagerly Awaiting your reply,
> 
> Thanks & Regards,
> 
> Puneet Singh
> 
> 

=Dennis Heimbigner
  Unidata


Ticket Details
===================
Ticket ID: CZA-818826
Department: Support netCDF
Priority: Critical
Status: Open
===================
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