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Re: 20000307: installing under Linux with Fujitsu f90: missing libfj9i6.so.1

Bjorn,

>Date: Mon, 06 Mar 2000 17:05:22 -0800
>From: bjorn stevens <address@hidden>
>Organization: University of California Los Angeles
>To: Steve Emmerson <address@hidden>
>Subject: Re: installing under Linux with Fujitsu f90: missing libfj9i6.so.1
>Keywords: 199912112259.PAA15795

In the above message, you wrote:

> attatched is the message I thought I sent you regarding how I finally
> configured my system.. and the floating point error I got on make test.  I
> have been using netCDF on my linux system, despite this error, and as of yet
> have had no problems.

Thanks for sending this in.

> --------------A9183492D994CDB541E157BC
> Content-Type: text/plain; charset=us-ascii;
>  name="tosteve"
> Content-Transfer-Encoding: 7bit
> Content-Disposition: inline;
>  filename="tosteve"
> 
> Steve,
> 
>   thanks again for all your help.  The system I used was Redhat Linux 6.0
> running on a Toshiba Tecra 8000 laptop.  The fortran compiler was
> 
> f90: Fujitsu Fortran Compiler Driver Version 1.0 (Jun 11 1999 00:49:31)
> 
> I set my environment variables as follows (under BASH):
> 
> export LD_LIBRARY_PATH=:/usr/local/lib:/usr/local/FFC/lib
> export CC=/usr/bin/egcs
> export CPPFLAGS='-DNDEBUG -Df2cFortran'
> export FC=/usr/local/FFC/bin/f90
> export FFLAGS="-O -fw"
> export CXX=/usr/bin/g++
> export CFLAGS=-O
> export CPPFLAGS='-DNDEBUG -DsunFortran'
> 
> The error I got on "make test" is given below (I'm giving you all the output
> from the make test file):
> 
> Cheers,  Bjorn
> 
> ------------------------------- output from "make test"
> make[1]: Entering directory `/usr/local/src/netcdf-3.5/src'
> 
> Making `test' in directory /usr/local/src/netcdf-3.5/src/libsrc
> 
> make[2]: Entering directory `/usr/local/src/netcdf-3.5/src/libsrc'
> ar cru         libnetcdf.a attr.o dim.o error.o libvers.o nc.o ncio.o ncx.o 
> putget.o string.o v1hpg.o v2i.o var.o
> ranlib libnetcdf.a
> /usr/bin/egcs -o t_nc -O  t_nc.o -L. -lnetcdf 
> ./t_nc
> trying again
> dimrename: IXX
> nc_close ret = 0
> 
> reopen id = 6 for filename test.nc
> NC done
> GATTR VAR VATTR
> VATTR
> VATTR
> VATTR
> VATTR
> VATTR
> fill_seq indices       1 2 3  75.000000 != 2.718282
> Done
> got val = 3.250000
> got val = 0.000000
> got val = 2.718282
> got val = 82555
> got val = 97
> got NC_CHAR val = A (0x41) 
> got NC_CHAR val = B (0x42) 
> got NC_CHAR val = "The red death had long devastated the country."
> got val = A (0x41) 
> got val = B (0x42) 
> got val = "The red death had long devastated the country."
> got vals = 0.000000 ... 447.000000
> re nc_close ret = 0
> cmp test.nc test_nc.sav
> *** Success ***
> make[2]: Leaving directory `/usr/local/src/netcdf-3.5/src/libsrc'
> 
> Returning to directory /usr/local/src/netcdf-3.5/src
> 
> make[1]: Leaving directory `/usr/local/src/netcdf-3.5/src'
> make[1]: Entering directory `/usr/local/src/netcdf-3.5/src'
> 
> Making `test' in directory /usr/local/src/netcdf-3.5/src/nctest
> 
> make[2]: Entering directory `/usr/local/src/netcdf-3.5/src/nctest'
> /usr/bin/egcs -o nctest -O  varget.o vargetg.o varput.o varputg.o vardef.o 
> vartests.o vputget.o vputgetg.o driver.o cdftests.o dimtests.o rec.o 
> atttests.o misctest.o add.o error.o emalloc.o val.o slabs.o -L../libsrc 
> -lnetcdf  
> ./nctest
> *** Testing nccreate ...      ok ***
> *** Testing ncopen ...                ok ***
> *** Testing ncredef ...               ok ***
> *** Testing ncendef ...               ok ***
> *** Testing ncclose ...               ok ***
> *** Testing ncinquire ...     ok ***
> *** Testing ncsync ...                ok ***
> *** Testing ncabort ...               ok ***
> *** Testing ncdimdef ...      ok ***
> *** Testing ncdimid ...               ok ***
> *** Testing ncdiminq ...      ok ***
> *** Testing ncdimrename ...   ok ***
> *** Testing ncvardef ...      ok ***
> *** Testing ncvarid ...               ok ***
> *** Testing ncvarinq ...      ok ***
> *** Testing ncvarput1 ...     ok ***
> *** Testing ncvarget1 ...     ok ***
> *** Testing ncvarput ...      ok ***
> *** Testing ncvarget ...      ok ***
> *** Testing ncvarputg ...     ok ***
> *** Testing ncvargetg ...     ok ***
> *** Testing ncrecinq ...      ok ***
> *** Testing ncrecput ...      ok ***
> *** Testing ncrecget ...      ok ***
> *** Testing ncvarrename ...   ok ***
> *** Testing ncattput ...      ok ***
> *** Testing ncattinq ...      ok ***
> *** Testing ncattget ...      ok ***
> *** Testing ncattcopy ...     ok ***
> *** Testing ncattname ...     ok ***
> *** Testing ncattrename ...   ok ***
> *** Testing ncattdel ...      ok ***
> *** Testing nctypelen ...     ok ***
> cmp testfile.nc testfile_nc.sav
> make[2]: Leaving directory `/usr/local/src/netcdf-3.5/src/nctest'
> 
> Returning to directory /usr/local/src/netcdf-3.5/src
> 
> make[1]: Leaving directory `/usr/local/src/netcdf-3.5/src'
> make[1]: Entering directory `/usr/local/src/netcdf-3.5/src'
> 
> Making `test' in directory /usr/local/src/netcdf-3.5/src/nc_test
> 
> make[2]: Entering directory `/usr/local/src/netcdf-3.5/src/nc_test'
> /usr/bin/egcs -o nc_test -O  nc_test.o error.o test_get.o test_put.o 
> test_read.o test_write.o util.o -L../libsrc -lnetcdf -lm 
> ./nc_test -c
> ./nc_test
> *** Testing nc_strerror ... ok
> *** Testing nc_open ... ok
> *** Testing nc_close ... ok
> *** Testing nc_inq ... ok
> *** Testing nc_inq_dimid ... ok
> *** Testing nc_inq_dim ... ok
> *** Testing nc_inq_dimlen ... ok
> *** Testing nc_inq_dimname ... ok
> *** Testing nc_inq_varid ... ok
> *** Testing nc_inq_var ... ok
> *** Testing nc_inq_natts ... ok
> *** Testing nc_inq_ndims ... ok
> *** Testing nc_inq_nvars ... ok
> *** Testing nc_inq_unlimdim ... ok
> *** Testing nc_inq_vardimid ... ok
> *** Testing nc_inq_varname ... ok
> *** Testing nc_inq_varnatts ... ok
> *** Testing nc_inq_varndims ... ok
> *** Testing nc_inq_vartype ... ok
> *** Testing nc_get_var_text ...  179 good comparisons. ok
> *** Testing nc_get_var_uchar ...  264 good comparisons. ok
> *** Testing nc_get_var_schar ...  269 good comparisons. ok
> *** Testing nc_get_var_short ...  682 good comparisons. ok
> *** Testing nc_get_var_int ...  1189 good comparisons. ok
> *** Testing nc_get_var_long ...  1189 good comparisons. ok
> *** Testing nc_get_var_float ...  1194 good comparisons. ok
> *** Testing nc_get_var_double ...  1207 good comparisons. ok
> *** Testing nc_get_var1_text ...  179 good comparisons. ok
> *** Testing nc_get_var1_uchar ...  264 good comparisons. ok
> *** Testing nc_get_var1_schar ...  269 good comparisons. ok
> *** Testing nc_get_var1_short ...  682 good comparisons. ok
> *** Testing nc_get_var1_int ...  1189 good comparisons. ok
> *** Testing nc_get_var1_long ...  1189 good comparisons. ok
> *** Testing nc_get_var1_float ...  1194 good comparisons. ok
> *** Testing nc_get_var1_double ...  1207 good comparisons. ok
> *** Testing nc_get_vara_text ...  179 good comparisons. ok
> *** Testing nc_get_vara_uchar ...  264 good comparisons. ok
> *** Testing nc_get_vara_schar ...  269 good comparisons. ok
> *** Testing nc_get_vara_short ...  682 good comparisons. ok
> *** Testing nc_get_vara_int ...  1189 good comparisons. ok
> *** Testing nc_get_vara_long ...  1189 good comparisons. ok
> *** Testing nc_get_vara_float ...  1194 good comparisons. ok
> *** Testing nc_get_vara_double ...  1207 good comparisons. ok
> *** Testing nc_get_vars_text ...  179 good comparisons. ok
> *** Testing nc_get_vars_uchar ...  264 good comparisons. ok
> *** Testing nc_get_vars_schar ...  269 good comparisons. ok
> *** Testing nc_get_vars_short ...  682 good comparisons. ok
> *** Testing nc_get_vars_int ...  1189 good comparisons. ok
> *** Testing nc_get_vars_long ...  1189 good comparisons. ok
> *** Testing nc_get_vars_float ...  1194 good comparisons. ok
> *** Testing nc_get_vars_double ...  1207 good comparisons. ok
> *** Testing nc_get_varm_text ...  179 good comparisons. ok
> *** Testing nc_get_varm_uchar ...  264 good comparisons. ok
> *** Testing nc_get_varm_schar ...  269 good comparisons. ok
> *** Testing nc_get_varm_short ...  682 good comparisons. ok
> *** Testing nc_get_varm_int ...  1189 good comparisons. ok
> *** Testing nc_get_varm_long ...  1189 good comparisons. ok
> *** Testing nc_get_varm_float ...  1194 good comparisons. ok
> *** Testing nc_get_varm_double ...  1207 good comparisons. ok
> *** Testing nc_get_att_text ...  7 good comparisons. ok
> *** Testing nc_get_att_uchar ...  5 good comparisons. ok
> *** Testing nc_get_att_schar ...  7 good comparisons. ok
> *** Testing nc_get_att_short ...  15 good comparisons. ok
> *** Testing nc_get_att_int ...  19 good comparisons. ok
> *** Testing nc_get_att_long ...  19 good comparisons. ok
> *** Testing nc_get_att_float ...  21 good comparisons. ok
> *** Testing nc_get_att_double ...  27 good comparisons. ok
> *** Testing nc_inq_att ... ok
> *** Testing nc_inq_attname ... ok
> *** Testing nc_inq_attid ... ok
> *** Testing nc_inq_attlen ... ok
> *** Testing nc_inq_atttype ... ok
> *** Testing nc_create ... ok
> *** Testing nc_redef ...  1386 good comparisons.  34 good comparisons. ok
> *** Testing nc_sync ...  34 good comparisons.  1386 good comparisons. ok
> *** Testing nc_abort ...  1386 good comparisons.  34 good comparisons. ok
> *** Testing nc_def_dim ... ok
> *** Testing nc_rename_dim ... ok
> *** Testing nc_def_var ... ok
> *** Testing nc_put_var_text ...  179 good comparisons. ok
> *** Testing nc_put_var_uchar ...  264 good comparisons. ok
> *** Testing nc_put_var_schar ...  269 good comparisons. ok
> *** Testing nc_put_var_short ...  682 good comparisons. ok
> *** Testing nc_put_var_int ...  1189 good comparisons. ok
> *** Testing nc_put_var_long ...  1189 good comparisons. ok
> *** Testing nc_put_var_float ...  1194 good comparisons. ok
> *** Testing nc_put_var_double ...  1207 good comparisons. ok
> *** Testing nc_put_var1_text ...  179 good comparisons. ok
> *** Testing nc_put_var1_uchar ...  264 good comparisons. ok
> *** Testing nc_put_var1_schar ...  269 good comparisons. ok
> *** Testing nc_put_var1_short ...  682 good comparisons. ok
> *** Testing nc_put_var1_int ...  1189 good comparisons. ok
> *** Testing nc_put_var1_long ...  1189 good comparisons. ok
> *** Testing nc_put_var1_float ...  1194 good comparisons. ok
> *** Testing nc_put_var1_double ...  1207 good comparisons. ok
> *** Testing nc_put_vara_text ...  179 good comparisons. ok
> *** Testing nc_put_vara_uchar ...  264 good comparisons. ok
> *** Testing nc_put_vara_schar ...  269 good comparisons. ok
> *** Testing nc_put_vara_short ...  682 good comparisons. ok
> *** Testing nc_put_vara_int ...  1189 good comparisons. ok
> *** Testing nc_put_vara_long ...  1189 good comparisons. ok
> *** Testing nc_put_vara_float ...  1194 good comparisons. ok
> *** Testing nc_put_vara_double ...  1207 good comparisons. ok
> *** Testing nc_put_vars_text ...  179 good comparisons. ok
> *** Testing nc_put_vars_uchar ...  264 good comparisons. ok
> *** Testing nc_put_vars_schar ...  269 good comparisons. ok
> *** Testing nc_put_vars_short ...  682 good comparisons. ok
> *** Testing nc_put_vars_int ...  1189 good comparisons. ok
> *** Testing nc_put_vars_long ...  1189 good comparisons. ok
> *** Testing nc_put_vars_float ...  1194 good comparisons. ok
> *** Testing nc_put_vars_double ...  1207 good comparisons. ok
> *** Testing nc_put_varm_text ...  179 good comparisons. ok
> *** Testing nc_put_varm_uchar ...  264 good comparisons. ok
> *** Testing nc_put_varm_schar ...  269 good comparisons. ok
> *** Testing nc_put_varm_short ...  682 good comparisons. ok
> *** Testing nc_put_varm_int ...  1189 good comparisons. ok
> *** Testing nc_put_varm_long ...  1189 good comparisons. ok
> *** Testing nc_put_varm_float ...  1194 good comparisons. ok
> *** Testing nc_put_varm_double ...  1207 good comparisons. ok
> *** Testing nc_rename_var ...  1386 good comparisons. ok
> *** Testing nc_put_att_text ...  7 good comparisons. ok
> *** Testing nc_put_att_uchar ...  5 good comparisons. ok
> *** Testing nc_put_att_schar ...  7 good comparisons. ok
> *** Testing nc_put_att_short ...  15 good comparisons. ok
> *** Testing nc_put_att_int ...  19 good comparisons. ok
> *** Testing nc_put_att_long ...  19 good comparisons. ok
> *** Testing nc_put_att_float ...  21 good comparisons. ok
> *** Testing nc_put_att_double ...  27 good comparisons. ok
> *** Testing nc_copy_att ...  34 good comparisons. ok
> *** Testing nc_rename_att ...  34 good comparisons. ok
> *** Testing nc_del_att ... ok
> *** Testing nc_set_fill ...  2796 good comparisons. ok
> 
> Total number of failures: 0
> *** Success ***
> make[2]: Leaving directory `/usr/local/src/netcdf-3.5/src/nc_test'
> 
> Returning to directory /usr/local/src/netcdf-3.5/src
> 
> make[1]: Leaving directory `/usr/local/src/netcdf-3.5/src'
> make[1]: Entering directory `/usr/local/src/netcdf-3.5/src'
> 
> Making `test' in directory /usr/local/src/netcdf-3.5/src/fortran
> 
> make[2]: Entering directory `/usr/local/src/netcdf-3.5/src/fortran'
> ar cru         ../libsrc/libnetcdf.a fort-attio.o fort-control.o fort-dim.o 
> fort-genatt.o fort-geninq.o fort-genvar.o fort-lib.o fort-misc.o 
> fort-v2compat.o fort-vario.o fort-var1io.o fort-varaio.o fort-varmio.o 
> fort-varsio.o
> ranlib ../libsrc/libnetcdf.a
> /usr/local/FFC/bin/f90 -o ftest -O -fw  ftest.o ../libsrc/libnetcdf.a 
> ./ftest
> *** Testing nccre ...
> *** Testing ncddef ...
> *** Testing ncvdef ...
> *** Testing ncapt, ncaptc ...
> *** Testing ncclos ...
> *** Testing ncvpt1 ...
> *** Testing ncvgt1 ...
> *** Testing ncvpt ...
> *** Testing ncopn, ncinq, ncdinq, ncvinq, ncanam, ncainq ...
> *** Testing ncvgt, ncvgtc ...
> *** Testing ncagt, ncagtc ...
> *** Testing ncredf, ncdren, ncvren, ncaren, ncendf ...
> *** Testing ncacpy ...
> *** Testing ncadel ...
> *** Testing fill values ...
> make[2]: Leaving directory `/usr/local/src/netcdf-3.5/src/fortran'
> 
> Returning to directory /usr/local/src/netcdf-3.5/src
> 
> make[1]: Leaving directory `/usr/local/src/netcdf-3.5/src'
> make[1]: Entering directory `/usr/local/src/netcdf-3.5/src'
> 
> Making `test' in directory /usr/local/src/netcdf-3.5/src/nf_test
> 
> make[2]: Entering directory `/usr/local/src/netcdf-3.5/src/nf_test'
> /usr/local/FFC/bin/f90 -o nf_test -O -fw  test_get.o test_put.o nf_error.o 
> nf_test.o test_read.o test_write.o util.o fortlib.o ../libsrc/libnetcdf.a  
> -lm 
> ./nf_test -c
> make[2]: *** [test.nc] Floating point exception
> make[2]: *** Deleting file `test.nc'
> make[2]: Leaving directory `/usr/local/src/netcdf-3.5/src/nf_test'
> make[1]: *** [subdir_target] Error 1
> make[1]: Leaving directory `/usr/local/src/netcdf-3.5/src'
> make: *** [nf_test/test] Error 2
> 
> --------------A9183492D994CDB541E157BC--

Regards,
Steve Emmerson   <http://www.unidata.ucar.edu>