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[netCDF #SGB-677139]: Help

Hello, and Happy Holidays!

You don't need to have the parallel version of hdf5 to have compression, 
although if you are using parallel hdf5 you will need to use parallel netcdf-c. 
 There are newer versions of netCDF, the latest being 4.7.3, perhaps that might 
work better.  

I've scanned the screenshot you provided, but am not able to figure out what 
the associated problem might be; would it be possible to get the entire 
config.log file generated when you run configure?

Thanks!

-Ward

> Hello Unidata User Support,
> 
> Hope you are enjoying your holidays :)
> 
> With your reply, I contacted the hdf5 group, and I could successfully build 
> the hdf5-mpi (a parallel version of hdf5). I built it with gcc version 4.8.5 
> and openmpi version 3.
> Now I am building the netcdf-c-4.4.1.1. But my configure fails.
> The error says it is mainly due to either the hdf5, which fails the test or 
> something else.
> I have attached the result of "cat config.log | grep error."
> 
> My main concern is in order to have the compression feature of netcdf, do I 
> need to have the parallel version of hdf5 and also netcdf-c-4.4.1.1? Next, do 
> I need to change the gcc version and upgrade it to a version like 7? 
> Moreover, could you please help me to solve the error?
> 
> These are my steps until now to build the netcfd-c:
> 
> module load mpi
> export H5DIR=/home/Melmle1389/Downloads/hdf5-1.10.5
> export CPPFLAGS=-I/home/Melmel1389/lib/hdf5-mpi/include
> export LDFLAGS=-L/home/Melmle1389/lib/hdf5-mpi/lib
> ./configure --disable-shared --enable-parallel-tests --enable-pnetcdf
> 
> Also, I am using a VM in my physical Windows 10, and I am using centos 7.
> 
> I am looking forward to hearing from you.
> Please do not hesitate to email me for further information.
> 
> 
> 
> #####################################################
> 
> Melika Rahimimovaghar
> 
> PhD student, Department of Civil and Environmental Engineering
> 
> University of Western Ontario
> 
> #####################################################
> 
> ________________________________
> From: Unidata netCDF Support <address@hidden>
> Sent: 13 December 2019 12:27
> To: Melika Rahimimovaghar <address@hidden>
> Subject: [netCDF #SGB-677139]: Help
> 
> 
> Melika Rahimimovaghar,
> 
> Thank you for contacting us. This is an automated response confirming the 
> receipt of your ticket. One of our agents will get back to you as soon as 
> possible. For your records, the details of the ticket are listed below. When 
> replying, please make sure that the ticket ID is kept in the subject line to 
> ensure that your replies are tracked appropriately.
> 
> Ticket ID: SGB-677139
> Subject: Help
> Department: Support netCDF
> Priority: Normal
> Status: Open
> 
> 
> 
> The NetCDF libraries are developed at the Unidata Program Center,
> in Boulder, Colorado, funded primarily by the National Science Foundation.
> 
> All support requests are handled by the development team. No dedicated
> support staff are funded at this time. For this reason we cannot guarantee
> response times, nor that we can resolve every support issue, although we
> do our best to respond within 72 hours.
> 
> It is in the nature of support requests that the same question is asked many
> times. We urge you to search the support archives for material relating to
> your support request:
> 
> http://www.unidata.ucar.edu/search.jsp?support&netcdf
> 
> If you are having trouble building netCDF, please take a look at the
> "Building NetCDF" page:
> 
> https://www.unidata.ucar.edu/software/netcdf/docs/getting_and_building_netcdf.html
> 
> Windows users should see this paget:
> 
> https://www.unidata.ucar.edu/software/netcdf/docs/winbin.html
> 
> Complete documentation (including a tutorial, and sample programs in C, 
> Fortran,
> Java, and other programming languages) can be found on the netCDF 
> Documentation page:
> 
> http://www.unidata.ucar.edu/software/netcdf/docs/
> http://www.unidata.ucar.edu/software/netcdf/examples/programs/
> 
> If you resolve your issue through one of these methods, please send a reply to
> this email, letting us know that you no longer need support. This will help
> us spend more time on netCDF development.
> 
> Best regards,
> 
> Unidata User Support
> 
> 
> 


Ticket Details
===================
Ticket ID: SGB-677139
Department: Support netCDF
Priority: Emergency
Status: Closed
===================
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