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[netCDF #MTW-408320]: netCDF fortran library with ifort - error in make check

Pardon the delay.
You might try adding -lhdf5_hl to your list of libraries.

> Congratulations! You have successfully installed the netCDF |
> | Fortran libraries.                                          |
> |                                                             |
> | You can use script "nf-config" to find out the relevant     |
> | compiler options to build your application. Enter           |
> |                                                             |
> |     nf-config --help                                        |
> |                                                             |
> | for additional information.                                 |
> |                                                             |
> | CAUTION:                                                    |
> |                                                             |
> | If you have not already run "make check", then we strongly  |
> | recommend you do so. It does not take very long.            |
> |                                                             |
> | Before using netCDF to store important data, test your      |
> | build with "make check".                                    |
> |                                                             |
> | NetCDF is tested nightly on many platforms at Unidata       |
> | but your platform is probably different in some ways.       |
> |                                                             |
> | If any tests fail, please see the netCDF web site:          |
> | http://www.unidata.ucar.edu/software/netcdf/                |
> |                                                             |
> | NetCDF is developed and maintained at the Unidata Program   |
> | Center. Unidata provides a broad array of data and software |
> | tools for use in geoscience education and research.         |
> | http://www.unidata.ucar.edu
> 
> On Fri, May 24, 2019 at 2:51 PM alok <address@hidden> wrote:
> 
> > Please Help-
> >
> >
> > alok@alok-HP-Compaq-Elite-8300-MT:~/netcdf$ make check
> > Making check in fortran
> > make[1]: Entering directory '/home/alok/netcdf/fortran'
> > make  check-am
> > make[2]: Entering directory '/home/alok/netcdf/fortran'
> > make[2]: Nothing to be done for 'check-am'.
> > make[2]: Leaving directory '/home/alok/netcdf/fortran'
> > make[1]: Leaving directory '/home/alok/netcdf/fortran'
> > Making check in .
> > make[1]: Entering directory '/home/alok/netcdf'
> > make[1]: Leaving directory '/home/alok/netcdf'
> > Making check in nf_test
> > make[1]: Entering directory '/home/alok/netcdf/nf_test'
> > make  nf_test tst_f77_v2 ftst_vars ftst_vars2 ftst_vars3 ftst_vars4
> > ftst_vars5 ftst_vars6 ftst_types ftst_types2 ftst_types3 ftst_groups
> > ftst_path ftst_rengrps f90tst_vars tst_types tst_types2 f90tst_vars_vlen
> > tst_f90_nc4 f90tst_grps f90tst_fill f90tst_fill2 f90tst_vars3
> > f90tst_vars4 f90tst_vars2 f90tst_path f90tst_rengrps ftst_v2  tst_io
> > ftest tst_f90
> > make[2]: Entering directory '/home/alok/netcdf/nf_test'
> > make[2]: 'nf_test' is up to date.
> > make[2]: 'tst_f77_v2' is up to date.
> > make[2]: 'ftst_vars' is up to date.
> > make[2]: 'ftst_vars2' is up to date.
> > make[2]: 'ftst_vars3' is up to date.
> > make[2]: 'ftst_vars4' is up to date.
> > make[2]: 'ftst_vars5' is up to date.
> > make[2]: 'ftst_vars6' is up to date.
> > make[2]: 'ftst_types' is up to date.
> > make[2]: 'ftst_types2' is up to date.
> > make[2]: 'ftst_types3' is up to date.
> > make[2]: 'ftst_groups' is up to date.
> > make[2]: 'ftst_path' is up to date.
> > ifort -DHAVE_CONFIG_H -I. -I.. -I../libsrc  -I../fortran -I../fortran
> > -I../fortran  -O3 -xHost -ip -no-prec-div -static-intel -c -o
> > ftst_rengrps.o ftst_rengrps.F
> > /bin/bash ../libtool  --tag=F77   --mode=link ifort -I../fortran -O3
> > -xHost -ip -no-prec-div -static-intel   -o ftst_rengrps ftst_rengrps.o
> > f03lib_f_interfaces.o f03lib.o handle_err.o ../fortran/libnetcdff.la
> > -lnetcdf -lhdf5 -lz -lcurl -lm
> > libtool: link: ifort -I../fortran -O3 -xHost -ip -no-prec-div
> > -static-intel -o .libs/ftst_rengrps ftst_rengrps.o f03lib_f_interfaces.o
> > f03lib.o handle_err.o ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz
> > -lcurl -lm -Wl,-rpath -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o f90tst_vars.o  f90tst_vars.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > f90tst_vars f90tst_vars.o ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz
> > -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/f90tst_vars f90tst_vars.o
> > ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz -lcurl -lm -Wl,-rpath
> > -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o tst_types.o  tst_types.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > tst_types tst_types.o ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz
> > -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/tst_types tst_types.o
> > ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz -lcurl -lm -Wl,-rpath
> > -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o tst_types2.o  tst_types2.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > tst_types2 tst_types2.o ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz
> > -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/tst_types2 tst_types2.o
> > ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz -lcurl -lm -Wl,-rpath
> > -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o f90tst_vars_vlen.o f90tst_vars_vlen.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > f90tst_vars_vlen f90tst_vars_vlen.o ../fortran/libnetcdff.la -lnetcdf
> > -lhdf5 -lz -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/f90tst_vars_vlen
> > f90tst_vars_vlen.o  ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz
> > -lcurl -lm -Wl,-rpath -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o tst_f90_nc4.o  tst_f90_nc4.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > tst_f90_nc4 tst_f90_nc4.o ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz
> > -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/tst_f90_nc4 tst_f90_nc4.o
> > ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz -lcurl -lm -Wl,-rpath
> > -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o f90tst_grps.o  f90tst_grps.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > f90tst_grps f90tst_grps.o ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz
> > -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/f90tst_grps f90tst_grps.o
> > ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz -lcurl -lm -Wl,-rpath
> > -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o f90tst_fill.o  f90tst_fill.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > f90tst_fill f90tst_fill.o ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz
> > -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/f90tst_fill f90tst_fill.o
> > ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz -lcurl -lm -Wl,-rpath
> > -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o f90tst_fill2.o  f90tst_fill2.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > f90tst_fill2 f90tst_fill2.o ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz
> > -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/f90tst_fill2
> > f90tst_fill2.o  ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz
> > -lcurl -lm -Wl,-rpath -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o f90tst_vars3.o  f90tst_vars3.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > f90tst_vars3 f90tst_vars3.o ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz
> > -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/f90tst_vars3
> > f90tst_vars3.o  ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz
> > -lcurl -lm -Wl,-rpath -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o f90tst_vars4.o  f90tst_vars4.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > f90tst_vars4 f90tst_vars4.o ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz
> > -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/f90tst_vars4
> > f90tst_vars4.o  ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz
> > -lcurl -lm -Wl,-rpath -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o f90tst_vars2.o  f90tst_vars2.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > f90tst_vars2 f90tst_vars2.o ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz
> > -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/f90tst_vars2
> > f90tst_vars2.o  ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz
> > -lcurl -lm -Wl,-rpath -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o f90tst_path.o  f90tst_path.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > f90tst_path f90tst_path.o ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz
> > -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/f90tst_path f90tst_path.o
> > ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz -lcurl -lm -Wl,-rpath
> > -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o f90tst_rengrps.o  f90tst_rengrps.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > f90tst_rengrps f90tst_rengrps.o ../fortran/libnetcdff.la -lnetcdf -lhdf5
> > -lz -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/f90tst_rengrps
> > f90tst_rengrps.o  ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz
> > -lcurl -lm -Wl,-rpath -Wl,/home/alok/netcdf/lib
> > ifort -DHAVE_CONFIG_H -I. -I.. -I../libsrc  -I../fortran -I../fortran
> > -I../fortran  -O3 -xHost -ip -no-prec-div -static-intel -c -o ftst_v2.o
> > ftst_v2.F
> > /bin/bash ../libtool  --tag=F77   --mode=link ifort -I../fortran -O3
> > -xHost -ip -no-prec-div -static-intel   -o ftst_v2 ftst_v2.o
> > ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz -lcurl -lm
> > libtool: link: ifort -I../fortran -O3 -xHost -ip -no-prec-div
> > -static-intel -o .libs/ftst_v2 ftst_v2.o ../fortran/.libs/libnetcdff.so
> > -lnetcdf -lhdf5 -lz -lcurl -lm -Wl,-rpath -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o tst_io.o  tst_io.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > tst_io tst_io.o ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/tst_io tst_io.o
> > ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz -lcurl -lm -Wl,-rpath
> > -Wl,/home/alok/netcdf/lib
> > ifort -DHAVE_CONFIG_H -I. -I.. -I../libsrc  -I../fortran -I../fortran
> > -I../fortran  -O3 -xHost -ip -no-prec-div -static-intel -c -o ftest.o
> > ftest.F
> > /bin/bash ../libtool  --tag=F77   --mode=link ifort -I../fortran -O3
> > -xHost -ip -no-prec-div -static-intel   -o ftest ftest.o f03lib.o
> > ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz -lcurl -lm
> > libtool: link: ifort -I../fortran -O3 -xHost -ip -no-prec-div
> > -static-intel -o .libs/ftest ftest.o f03lib.o
> > ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz -lcurl -lm -Wl,-rpath
> > -Wl,/home/alok/netcdf/lib
> > ifort -I../fortran  -g -c -o tst_f90.o  tst_f90.f90
> > /bin/bash ../libtool  --tag=FC   --mode=link ifort -I../fortran -g   -o
> > tst_f90 tst_f90.o ../fortran/libnetcdff.la -lnetcdf -lhdf5 -lz -lcurl -lm
> > libtool: link: ifort -I../fortran -g -o .libs/tst_f90 tst_f90.o
> > ../fortran/.libs/libnetcdff.so -lnetcdf -lhdf5 -lz -lcurl -lm -Wl,-rpath
> > -Wl,/home/alok/netcdf/lib
> > make[2]: Leaving directory '/home/alok/netcdf/nf_test'
> > make  check-TESTS
> > make[2]: Entering directory '/home/alok/netcdf/nf_test'
> > make[3]: Entering directory '/home/alok/netcdf/nf_test'
> > ../test-driver: line 107: 12419 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: nf_test
> > PASS: create_fills.sh
> > PASS: tst_f77_v2
> > ../test-driver: line 107: 12468 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: ftst_vars
> > ../test-driver: line 107: 12488 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: ftst_vars2
> > ../test-driver: line 107: 12508 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: ftst_vars3
> > ../test-driver: line 107: 12528 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: ftst_vars4
> > ../test-driver: line 107: 12548 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: ftst_vars5
> > ../test-driver: line 107: 12568 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: ftst_vars6
> > ../test-driver: line 107: 12588 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: ftst_types
> > ../test-driver: line 107: 12608 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: ftst_types2
> > ../test-driver: line 107: 12628 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: ftst_types3
> > ../test-driver: line 107: 12648 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: ftst_groups
> > ../test-driver: line 107: 12668 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: ftst_path
> > ../test-driver: line 107: 12688 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: ftst_rengrps
> > ../test-driver: line 107: 12708 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: f90tst_vars
> > ../test-driver: line 107: 12728 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: tst_types
> > ../test-driver: line 107: 12748 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: tst_types2
> > PASS: f90tst_vars_vlen
> > ../test-driver: line 107: 12787 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: tst_f90_nc4
> > ../test-driver: line 107: 12807 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: f90tst_grps
> > ../test-driver: line 107: 12827 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: f90tst_fill
> > ../test-driver: line 107: 12847 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: f90tst_fill2
> > ../test-driver: line 107: 12867 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: f90tst_vars3
> > ../test-driver: line 107: 12887 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: f90tst_vars4
> > ../test-driver: line 107: 12907 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: f90tst_vars2
> > ../test-driver: line 107: 12927 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: f90tst_path
> > ../test-driver: line 107: 12947 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: f90tst_rengrps
> > ../test-driver: line 107: 12967 Aborted                 (core dumped)
> > "$@" > $log_file 2>&1
> > FAIL: ftst_v2
> > PASS: tst_io
> > PASS: ftest
> > PASS: tst_f90
> >
> > ============================================================================
> > Testsuite summary for netCDF-Fortran 4.4.5
> >
> > ============================================================================
> > # TOTAL: 32
> > # PASS:  6
> > # SKIP:  0
> > # XFAIL: 0
> > # FAIL:  26
> > # XPASS: 0
> > # ERROR: 0
> >
> > ============================================================================
> > See nf_test/test-suite.log
> > Please report to address@hidden
> >
> > ============================================================================
> > Makefile:1451: recipe for target 'test-suite.log' failed
> > make[3]: *** [test-suite.log] Error 1
> > make[3]: Leaving directory '/home/alok/netcdf/nf_test'
> > Makefile:1557: recipe for target 'check-TESTS' failed
> > make[2]: *** [check-TESTS] Error 2
> > make[2]: Leaving directory '/home/alok/netcdf/nf_test'
> > Makefile:1875: recipe for target 'check-am' failed
> > make[1]: *** [check-am] Error 2
> > make[1]: Leaving directory '/home/alok/netcdf/nf_test'
> > Makefile:545: recipe for target 'check-recursive' failed
> > make: *** [check-recursive] Error 1
> >
> >
> 
> 

=Dennis Heimbigner
  Unidata


Ticket Details
===================
Ticket ID: MTW-408320
Department: Support netCDF
Priority: High
Status: Open
===================
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