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[netCDF #EDR-974201]: Need libnetcdff.so

Sorry for the delay.
The first thing to do is to see what was installed.
So, after you do the build, send us the output from
the 'make install' command for netcdf-fortran.
While you are at it, look at that output yourself
and see if you can see where it installs anything
with the name 'libnetcdff.*' (e.g. libnetcdff.a, libnetcdff.so, etc).
This might give you a clue as to what is happening.

> Package Version:
> Operating System: MacOS 10.13.6
> Hardware:
> Description of problem: Hello,
> 
> I'm trying to build some software (Mars Climate Database, 
> http://www-mars.lmd.jussieu.fr/mars/access.html) on a Mac running macOS 
> 10.13.6. It relies on libnetcdff.so, but no matter what I do during 
> compilation of netcdf, or netcdf-c and netcdf-fortran, it never gets created.
> 
> I've followed the directions here 
> https://www.unidata.ucar.edu/software/netcdf/docs/getting_and_building_netcdf.html​
>  for the netcdf-c install, and the directions here 
> https://www.unidata.ucar.edu/software/netcdf/docs/building_netcdf_fortran.html​
>  for the netcdf-fortran install (with shared libraries). I've also tried 
> adapting all of those instructions to different versions of netcdf (4.0.1 is 
> what the developer uses), most recently trying netcdf-c-4.4.1.1 and 
> netcdf-fortran-4.4.1. I've tried compiling with "--enable-shared" in the 
> configure step, and without (as it's not included in instructions for shared 
> libraries???), all with the same result. I've also tried with the 
> "--disable-fortran-type-check", just in case, (i'm still kind of a novice at 
> compiling software from source, so I don't really know what "cross-compiling" 
> means, but thought I'd give it a shot), but still no joy.
> 
> Here is the output from my most recent attempt to configure. Notice it DOES 
> show that shared libraries are requested, but they still are not being 
> created:
> 
> sh-3.2# CPPFLAGS=-I/opt/local/netcdf/include LDFLAGS=-L/opt/local/netcdf/lib 
> ./configure --enable-shared --prefix=/opt/local/netcdf​
> configure: netCDF-Fortran 4.4.1
> checking build system type... x86_64-apple-darwin17.7.0
> checking host system type... x86_64-apple-darwin17.7.0
> checking target system type... x86_64-apple-darwin17.7.0
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for a thread-safe mkdir -p... ./install-sh -c -d
> checking for gawk... no
> checking for mawk... no
> checking for nawk... no
> checking for awk... awk
> checking whether make sets $(MAKE)... yes
> checking whether make supports nested variables... yes
> checking whether to enable maintainer-specific portions of Makefiles... no
> configure: checking user options
> checking whether extra valgrind tests should be run... no
> checking whether parallel IO tests should be run... no
> checking whether netCDF extra tests should be run (developers only)... no
> checking for doxygen... no
> configure: WARNING: Doxygen not found - documentation will not be built
> checking for dot... no
> configure: WARNING: dot not found - will use simple charts in documentation
> configure: finding C compiler
> checking for gcc... gcc
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ISO C89... none needed
> checking whether gcc understands -c and -o together... yes
> checking for style of include used by make... GNU
> checking dependency style of gcc... gcc3
> checking for an ANSI C-conforming const... yes
> configure: finding Fortran compiler
> checking whether we are using the GNU Fortran compiler... yes
> checking whether gfortran accepts -g... yes
> checking for gfortran... gfortran
> checking whether we are using the GNU Fortran 77 compiler... yes
> checking whether gfortran accepts -g... yes
> checking whether Fortran compiler is checked for ISO_C_BINDING support... yes
> checking for Fortran flag to compile .f90 files... none
> checking fortran 90 modules inclusion flag... -I
> checking if Fortran compiler supports Fortran 2003 ISO_C_BINDING... yes
> checking if Fortran compiler supports Fortran 2008 ISO_FORTRAN_ENV 
> additions... yes
> checking if Fortran compiler supports TS29113 standard extension... yes
> checking whether F03 native code is desired... yes
> checking whether fortran type sizes should be checked... yes
> checking whether large file (> 2GB) tests should be run... no
> checking whether benchmaks should be run (experimental)... no
> checking where to put large temp files if large file tests are run... .
> configure: setting up libtool
> checking how to print strings... printf
> checking for a sed that does not truncate output... /usr/bin/sed
> checking for grep that handles long lines and -e... /usr/bin/grep
> checking for egrep... /usr/bin/grep -E
> checking for fgrep... /usr/bin/grep -F
> checking for ld used by gcc... /usr/bin/ld
> checking if the linker (/usr/bin/ld) is GNU ld... no
> checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
> checking the name lister (/usr/bin/nm -B) interface... BSD nm
> checking whether ln -s works... yes
> checking the maximum length of command line arguments... 196608
> checking whether the shell understands some XSI constructs... yes
> checking whether the shell understands "+="... yes
> checking how to convert x86_64-apple-darwin17.7.0 file names to 
> x86_64-apple-darwin17.7.0 format... func_convert_file_noop
> checking how to convert x86_64-apple-darwin17.7.0 file names to toolchain 
> format... func_convert_file_noop
> checking for /usr/bin/ld option to reload object files... -r
> checking for objdump... objdump
> checking how to recognize dependent libraries... pass_all
> checking for dlltool... no
> checking how to associate runtime and link libraries... printf %s\n
> checking for ar... ar
> checking for archiver @FILE support... no
> checking for strip... strip
> checking for ranlib... ranlib
> checking command to parse /usr/bin/nm -B output from gcc object... ok
> checking for sysroot... no
> checking for mt... no
> checking if : is a manifest tool... no
> checking for dsymutil... dsymutil
> checking for nmedit... nmedit
> checking for lipo... lipo
> checking for otool... otool
> checking for otool64... no
> checking for -single_module linker flag... yes
> checking for -exported_symbols_list linker flag... yes
> checking for -force_load linker flag... yes
> checking how to run the C preprocessor... gcc -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking for dlfcn.h... yes
> checking for objdir... .libs
> checking if gcc supports -fno-rtti -fno-exceptions... no
> checking for gcc option to produce PIC... -fno-common -DPIC
> checking if gcc PIC flag -fno-common -DPIC works... yes
> checking if gcc static flag -static works... no
> checking if gcc supports -c -o file.o... yes
> checking if gcc supports -c -o file.o... (cached) yes
> checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
> checking dynamic linker characteristics... darwin17.7.0 dyld
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... yes
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... yes
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... yes
> checking for gfortran option to produce PIC... -fno-common
> checking if gfortran PIC flag -fno-common works... yes
> checking if gfortran static flag -static works... no
> checking if gfortran supports -c -o file.o... yes
> checking if gfortran supports -c -o file.o... (cached) yes
> checking whether the gfortran linker (/usr/bin/ld) supports shared 
> libraries... yes
> checking dynamic linker characteristics... darwin17.7.0 dyld
> checking how to hardcode library paths into programs... immediate
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... yes
> checking for gfortran option to produce PIC... -fno-common
> checking if gfortran PIC flag -fno-common works... yes
> checking if gfortran static flag -static works... no
> checking if gfortran supports -c -o file.o... yes
> checking if gfortran supports -c -o file.o... (cached) yes
> checking whether the gfortran linker (/usr/bin/ld) supports shared 
> libraries... yes
> checking dynamic linker characteristics... darwin17.7.0 dyld
> checking how to hardcode library paths into programs... immediate
> configure: finding other utilities
> configure: trying to set fortran flags for this platform
> checking what FC is set to... gfortran
> checking for special C compiler options needed for large files... no
> checking for _FILE_OFFSET_BITS value needed for large files... no
> checking for /usr/bin/nm... /usr/bin/nm -B
> checking nm flags...
> checking for C-equivalent to Fortran routine "SUB"... sub_
> checking for Fortran "byte"... yes
> checking for Fortran "integer*2"... yes
> checking if Fortran "byte" is C "signed char"... yes
> checking if Fortran "byte" is C "short"... no
> checking if Fortran "byte" is C "int"... no
> checking if Fortran "byte" is C "long"... no
> checking if Fortran "integer*2" is C "short"... yes
> checking if Fortran "integer*2" is C "int"... no
> checking if Fortran "integer*2" is C "long"... no
> checking if Fortran "integer" is C "int"... yes
> checking if Fortran "real" is C "float"... yes
> checking if Fortran "doubleprecision" is C "double"... yes
> checking for Fortran-equivalent to netCDF "byte"... byte
> checking for Fortran-equivalent to netCDF "short"... integer*2
> checking whether extra example tests should be run... no
> checking whether a win32 DLL is desired... no
> configure: checking types, headers, and functions
> checking netcdf.h usability... yes
> checking netcdf.h presence... yes
> checking for netcdf.h... yes
> checking for library containing nc_open... -lnetcdf
> checking for nc_def_opaque... yes
> checking for nccreate... yes
> checking for nc_set_log_level... no
> checking for oc_open... yes
> checking for nc_use_parallel_enabled... no
> checking netCDF v2 API present... yes
> checking netCDF-4 present... yes
> checking for stdlib.h... (cached) yes
> checking for sys/types.h... (cached) yes
> checking sys/param.h usability... yes
> checking sys/param.h presence... yes
> checking for sys/param.h... yes
> checking locale.h usability... yes
> checking locale.h presence... yes
> checking for locale.h... yes
> checking stdio.h usability... yes
> checking stdio.h presence... yes
> checking for stdio.h... yes
> checking stdarg.h usability... yes
> checking stdarg.h presence... yes
> checking for stdarg.h... yes
> checking errno.h usability... yes
> checking errno.h presence... yes
> checking for errno.h... yes
> checking ctype.h usability... yes
> checking ctype.h presence... yes
> checking for ctype.h... yes
> checking fcntl.h usability... yes
> checking fcntl.h presence... yes
> checking for fcntl.h... yes
> checking malloc.h usability... no
> checking malloc.h presence... no
> checking for malloc.h... no
> checking for stdlib.h... (cached) yes
> checking for string.h... (cached) yes
> checking for strings.h... (cached) yes
> checking for unistd.h... (cached) yes
> checking for sys/stat.h... (cached) yes
> checking getopt.h usability... yes
> checking getopt.h presence... yes
> checking for getopt.h... yes
> checking sys/time.h usability... yes
> checking sys/time.h presence... yes
> checking for sys/time.h... yes
> checking sys/resource.h usability... yes
> checking sys/resource.h presence... yes
> checking for sys/resource.h... yes
> checking for dirent.h that defines DIR... yes
> checking for library containing opendir... none required
> checking for ANSI C header files... (cached) yes
> checking for sys/wait.h that is POSIX.1 compatible... yes
> checking whether time.h and sys/time.h may both be included... yes
> checking for vprintf... yes
> checking for _doprnt... no
> checking for stdbool.h that conforms to C99... yes
> checking for _Bool... yes
> checking for size_t... yes
> checking for working alloca.h... yes
> checking for alloca... yes
> checking for size_t... (cached) yes
> checking for off_t... yes
> checking for ssize_t... yes
> checking for ptrdiff_t... yes
> checking for uchar... no
> checking for longlong... no
> checking whether char is unsigned... no
> checking size of short... 2
> checking size of int... 4
> checking size of long... 8
> checking size of float... 4
> checking size of double... 8
> checking size of off_t... 8
> checking size of size_t... 8
> checking size of ptrdiff_t... 8
> configure: generating header files and makefiles
> checking that generated files are newer than configure... done
> configure: creating ./config.status
> config.status: creating Makefile
> config.status: creating nf-config
> config.status: creating netcdf-fortran.pc
> config.status: creating docs/Makefile
> config.status: creating libsrc/Makefile
> config.status: creating fortran/Makefile
> config.status: creating nf_test/Makefile
> config.status: creating nf03_test/Makefile
> config.status: creating CMakeExtras/Makefile
> config.status: creating examples/Makefile
> config.status: creating examples/F90/Makefile
> config.status: creating examples/F77/Makefile
> config.status: creating config.h
> config.status: config.h is unchanged
> config.status: creating libsrc/nfconfig1.inc
> config.status: libsrc/nfconfig1.inc is unchanged
> config.status: executing depfiles commands
> config.status: executing libtool commands
> sh-3.2#
> 
> 
> I'd be happy to provide more info/logs if needed, but I've been working at 
> this for more than a week and I'm at the end of my rope!
> 
> Thanks,
> Brian
> 
> 

=Dennis Heimbigner
  Unidata


Ticket Details
===================
Ticket ID: EDR-974201
Department: Support netCDF
Priority: Critical
Status: Open
===================
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