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[netCDF #EGO-288225]: Cannot link to hdf5.



As an experiment, try changing the LDFLAGS to this instead.
    LDFLAGS="-L${HDF5_DIR}/lib -lhdf5 -lhdf5_hl"


> 
> Can you provide the config.log file generated when you ran `configure`? It 
> will provide additional information which may be helpful for us to discover 
> what is going wrong.
> 
> Thank you,
> 
> -Ward
> 
> > Hi there,
> >
> > I have encountered the error:
> >
> > "configure: error: Can't find or link to the hdf5 library. Use
> > --disable-netcdf-4, or see config.log for errors."
> >
> > when I run configure on version 4.6.1 like so:
> >
> > """
> > ../configure CC=mpicc \
> > CXX=mpicxx \
> > FC=mpifort \
> > CPPFLAGS="-I${HDF5_DIR}/include" \
> > CFLAGS="-I${HDF5_DIR}/include" \
> > LDFLAGS="-L${HDF5_DIR}/lib" \
> > --prefix=${NETCDF4_DIR};
> > """
> >
> > I have compiled HDF5 version 1.10.2 :
> >
> > """
> > ldd ${HDF5_DIR}/lib/libhdf5.so.101.1.0
> > linux-vdso.so.1 (0x00007fff423fe000)
> > libsz.so.2 => not found
> > libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007fc7f3e80000)
> > libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fc7f3c7c000)
> > libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fc7f38de000)
> > libmpich.so.0 => /usr/lib/x86_64-linux-gnu/libmpich.so.0
> > (0x00007fc7f3428000)
> > libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fc7f3037000)
> > /lib64/ld-linux-x86-64.so.2 (0x00007fc7f4688000)
> > libcr.so.0 => /usr/lib/libcr.so.0 (0x00007fc7f2e2c000)
> > libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0
> > (0x00007fc7f2c0d000)
> > librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007fc7f2a05000)
> > libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007fc7f27ed000)
> > """
> >
> > I have linked HDF5 with zlib, as suggested here:
> >
> > https://www.unidata.ucar.edu/software/netcdf/docs/getting_and_building_netcdf.html
> >
> > So, I'm stumped!
> >
> > Can anyone help?  Thanks.
> >
> > -Evan
> >
> >
> 

=Dennis Heimbigner
  Unidata


Ticket Details
===================
Ticket ID: EGO-288225
Department: Support netCDF
Priority: Normal
Status: Open
===================
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