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[netCDF #SOY-717179]: Netcdf 4.1.3 ncdump errors

I think the issue is the "disk quota exceeded" line.
This means that the operating system on the machine you are using
has established limits on how much disk space you are allowed to use.
Apparently you have reached that limit. You will need to either
delete a bunch of files you no longer need, or you will need to
ask your system administrator to increase you disk quota.


> 
> I am trying to compile netcdf4.1.3 with icc and ifort compiler 17.0.1. When
> I make check the compilation, the ncgen and ncdump test were failed. Errors
> are pasted below.
> 
> I am a new atmospheric modeler with little experience on Linux compilation.
> Would you please provide any advise on this error?
> 
> Thank you so much!
> 
> Jay
> 
> *** Testing ncgen and ncdump for UTF8 support...
> *** creating classic offset file with utf8 characters...
> ncgen: Disk quota exceeded
> (genbin.c:59)
> FAIL: run_utf8_tests.sh
> 
> *** Testing netCDF-3 features of nccopy on ncdump/*.nc files
> *** copy c0.nc to copy_of_c0.nc ...
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/16939-lt-nccopy: Disk
> quota exceedednFAIL: tst_nccopy3.sh
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/16973-lt-tst_create_files:
> Disk quota exceedednFAIL: tst_create_files
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/17007-lt-tst_group_data:
> Disk quota exceedednFAIL: tst_group_data
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/17041-lt-tst_enum_data:
> Disk quota exceedednFAIL: tst_enum_data
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/17075-lt-tst_opaque_data:
> Disk quota exceedednFAIL: tst_opaque_data
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/17109-lt-tst_string_data:
> Disk quota exceedednFAIL: tst_string_data
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/17143-lt-tst_vlen_data:
> Disk quota exceedednFAIL: tst_vlen_data
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/17177-lt-tst_comp:
> Disk quota exceedednFAIL: tst_comp
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/17211-lt-tst_comp2:
> Disk quota exceedednFAIL: tst_comp2
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/17245-lt-tst_nans:
> Disk quota exceedednFAIL: tst_nans
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/17279-lt-tst_special_atts:
> Disk quota exceedednFAIL: tst_special_atts
> 
> *** Testing ncgen and ncdump test output for netCDF-4 format.
> *** creating netcdf-4 file c0.nc from c0.cdl...
> *** creating c1.cdl from c0.nc...
> *** comparing c1.cdl with ref_ctest1_nc4.cdl...
> 
> *** Testing ncgen and ncdump test output for netCDF-4 classic format.
> *** creating netcdf-4 classic file c0.nc from c0.cdl...
> *** creating c1.cdl from c0.nc...
> *** comparing c1.cdl with ref_ctest1_nc4c.cdl...
> 
> *** Testing ncdump output for netCDF-4 features.
> *** dumping tst_solar_1.nc to tst_solar_1.cdl...
> ./tst_netcdf4.sh: line 27: tst_solar_1.cdl: Disk quota exceeded
> FAIL: tst_netcdf4.sh
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/17377-lt-tst_h_rdc0:
> Disk quota exceedednFAIL: tst_h_rdc0
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/17412-lt-tst_unicode:
> Disk quota exceedednFAIL: tst_unicode
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/17446-lt-tst_fillbug:
> Disk quota exceedednFAIL: tst_fillbug
> 
> *** Running ncdump bug test.
> *** dumping tst_fillbug.nc to tst_fillbug.cdl...
> ./tst_fillbug.sh: line 10: tst_fillbug.cdl: Disk quota exceeded
> FAIL: tst_fillbug.sh
> 
> *** Running extra netcdf-4 tests.
> *** dumping tst_string_data.nc to tst_string_data.cdl...
> ./tst_netcdf4_4.sh: line 10: tst_string_data.cdl: Disk quota exceeded
> FAIL: tst_netcdf4_4.sh
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/17492-lt-tst_compress:
> Disk quota exceedednFAIL: tst_compress
> 
> *** Testing netCDF-4 features of nccopy on ncdump/*.nc files
> *** copy tst_comp.nc to copy_of_tst_comp.nc ...
> icc: warning #10237: -lcilkrts linked in dynamically, static library not
> available
> ld: cannot open output file
> /tiered/user/zj821/download/netcdf-4.1.3/ncdump/.libs/17552-lt-nccopy: Disk
> quota exceedednFAIL: tst_nccopy4.sh
> mkdir: cannot create directory `results': Disk quota exceeded
> FAIL: tst_ncgen4_classic.sh
> Performing diff tests: k=1
> mkdir: cannot create directory `results': Disk quota exceeded
> FAIL: tst_ncgen4.sh
> ================================================
> 22 of 30 tests failed
> Please report to address@hidden
> ================================================
> make[4]: *** [check-TESTS] Error 1
> make[4]: Leaving directory `/tiered/user/zj821/download/netcdf-4.1.3/ncdump'
> make[3]: *** [check-am] Error 2
> make[3]: Leaving directory `/tiered/user/zj821/download/netcdf-4.1.3/ncdump'
> make[2]: *** [check-recursive] Error 1
> make[2]: Leaving directory `/tiered/user/zj821/download/netcdf-4.1.3/ncdump'
> make[1]: *** [check] Error 2
> make[1]: Leaving directory `/tiered/user/zj821/download/netcdf-4.1.3/ncdump'
> make: *** [check-recursive] Error 1
> 
> 

=Dennis Heimbigner
  Unidata


Ticket Details
===================
Ticket ID: SOY-717179
Department: Support netCDF
Priority: Normal
Status: Open
===================
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