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[netCDF #UOY-859712]: netcdf 4.6.0. FAIL: tst_longremote3.sh

Hello Martin,

Thanks for reporting this; it does appear that something changed between 
version 4.4.1.1 and version 4.5.0; this ncdump command appears to have last 
worked at version 4.4.1.1 but has stopped working in versions 4.5.0 and 4.6.0 . 
I will attempt to correct this issue.  In the meantime, you may need to stay 
with version 4.4.1.1.

I have opened a github issue, viewable here:

* https://github.com/Unidata/netcdf-c/issues/899

I will work on fixing this for a new release.

-Ward

> Dear netcdf-support,
> 
> I am trying to build netcdf 4.6.0. It does not work. At this point I am
> lost and would need some help.
> 
> Greetings and many thanks for any help or suggestion,
> 
> Martin Schmidt
> 
> _________________________________________
> 
> make checks fail with the following error message:
> 
> FAIL: tst_longremote3.sh
> 
> logfile is attached.
> 
> Installing anyway, results in a ncdump that is not able to connect
> properly with a thredds:
> 
> ./ncdump
> http://phy-8.io-warnemuende.de:8080/thredds/dodsC/genus/IOW-THREDDS-genus_exp19_run3_5day_ocean_2017-10-20-16.nc
> 
> correct header
> 
> NetCDF: Index exceeds dimension bound
> Location: file vardata.c; line 473
> 
> The same works with earlier netcdf builds, build with the same configure
> flags. The server is public.
> 
> The result of ldd ncdump looks like for earlier builds.
> 
>    libnetcdf.so.13 =>
> /sw/data/netcdf/OS_42.3/4.6.0/gcc-4.8.5/lib64/libnetcdf.so.13
> (0x00007f39bc279000)
>    libhdf5_hl.so.10 =>
> /sw/data/hdf5/OS_42.3/1.8.20/gcc-4.8.5/lib64/libhdf5_hl.so.10
> (0x00007f39bc058000)
>    libhdf5.so.10 =>
> /sw/data/hdf5/OS_42.3/1.8.20/gcc-4.8.5/lib64/libhdf5.so.10
> (0x00007f39bbb68000)
>    libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f39bb94b000)
>    libsz.so.2 => /sw/data/szip/OS_42.3/2.1.1/gcc-4.8.5/lib64/libsz.so.2
> (0x00007f39bb737000)
>    libdl.so.2 => /lib64/libdl.so.2 (0x00007f39bb533000)
>    libm.so.6 => /lib64/libm.so.6 (0x00007f39bb236000)
>    libz.so.1 => /lib64/libz.so.1 (0x00007f39bb020000)
>    libcurl.so.4 => /usr/lib64/libcurl.so.4 (0x00007f39badb0000)  and so
> on ....
> 
> Details:
> 
> System: Linux PHY-10 4.4.114-42-default #1 SMP Tue Feb 6 10:58:10 UTC
> 2018 (b6ee9ae) x86_64 x86_64 x86_64 GNU/Linux
> 
> Compiler: (the same error is encountered with gcc-5 and gcc-7) gcc (SUSE
> Linux) 4.8.5
> 
> Configure:
> 
> export FC=gfortran
> export CC=gcc
> export CXX=g++
> 
> export NETCDF_ROOT=/sw/data/netcdf/OS_42.3/4.6.0/gcc-4.8.5
> export NETCDF_LIB=$NETCDF_ROOT/lib64
> export NETCDF_INC=$NETCDF_ROOT/include
> 
> export HDF_ROOT=/sw/data/hdf5/OS_42.3/1.8.20/gcc-4.8.5
> export HDF_LIB=$HDF_ROOT/lib64
> export HDF_INC=$HDF_ROOT/include
> 
> export SZIP_ROOT=/sw/data/szip/OS_42.3/2.1.1/gcc-4.8.5
> export SZIP_LIB=$SZIP_ROOT/lib64
> export SZIP_INC=$SZIP_ROOT/include
> 
> UDUNITS_ROOT=/sw/data/udunits/OS_42.3/2.2.24/gcc-4.8.5
> export UDUNITS_LIB=$UDUNITS_ROOT/lib64
> export UDUNITS_INC=$UDUNITS_ROOT/include
> 
> export LD_RUN_PATH=${SZIP_LIB}:${HDF_LIB}:${NETCDF_LIB}:${UDUNITS_LIB}
> 
> export CFLAGS="-fPIC -O3 -I$HDF_INC -I$SZIP_INC"
> export CPPFLAGS="-I$HDF_INC -I$SZIP_INC"
> export LDFLAGS="-fPIC -L$HDF_LIB -lhdf5 -lhdf5_hl -L$SZIP_LIB -lsz"
> 
> mkdir -p $NETCDF_ROOT
> ./configure --prefix=$NETCDF_ROOT \
>             --enable-netcdf-4\
>             --enable-cdf5 \
>             --enable-dap-long-tests \
>             --enable-large-file-tests \
>             --with-temp-large=/fast/mschmidt \
>             --enable-doxygen \
>             --enable-mmap \
>             --enable-jna
> 
> config.log is attached.
> 
> # General
> -------
> NetCDF Version:  4.6.0
> Configured On:  Fri Mar  9 16:29:03 CET 2018
> Host System:   x86_64-pc-linux-gnu
> Build Directory: /sw/data/netcdf/OS_42.3/4.6.0/gcc-4.8.5/netcdf-c-4.6.0
> Install Prefix:         /sw/data/netcdf/OS_42.3/4.6.0/gcc-4.8.5
> 
> # Compiling Options
> -----------------
> C Compiler:   /usr/bin/gcc
> CFLAGS:     -fPIC -O3 -I/sw/data/hdf5/OS_42.3/1.8.20/gcc-4.8.5/include
> -I/sw/data/szip/OS_42.3/2.1.1/gcc-4.8.5/include
> CPPFLAGS:   -I/sw/data/hdf5/OS_42.3/1.8.20/gcc-4.8.5/include
> -I/sw/data/szip/OS_42.3/2.1.1/gcc-4.8.5/include
> LDFLAGS:    -fPIC -L/sw/data/hdf5/OS_42.3/1.8.20/gcc-4.8.5/lib64 -lhdf5
> -lhdf5_hl -L/sw/data/szip/OS_42.3/2.1.1/gcc-4.8.5/lib64 -lsz
> AM_CFLAGS:
> AM_CPPFLAGS:
> AM_LDFLAGS:
> Shared Library:  yes
> Static Library:  yes
> Extra libraries: -ldl -lm -lz -lcurl
> 
> # Features
> --------
> NetCDF-2 API:  yes
> HDF4 Support:  no
> NetCDF-4 API:  yes
> NC-4 Parallel Support:  no
> PNetCDF Support: no
> DAP2 Support:  yes
> DAP4 Support:  yes
> Diskless Support:  yes
> MMap Support:  yes
> JNA Support:   yes
> CDF5 Support:  yes
> ERANGE fill Support:    no
> 
> 
> --
> Dr. Martin Schmidt
> Leibniz-Institute for Baltic Sea Research
> Seestrasse 15
> D18119 Rostock
> Germany
> 
> 
> 


Ticket Details
===================
Ticket ID: UOY-859712
Department: Support netCDF
Priority: Normal
Status: Closed
===================
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