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[netCDF #NQT-973003]: netcdf compilation - H5Fflush not found

Hello,

The issue appears to be a combination of how netCDF 4.4.1 (an old release) 
detects H5Fflush in HDF5 1.8.13 (also a very old release).  I would recommend 
updating both to the latest versions, 4.4.1.1 and 1.8.19 respectively.  If you 
do not wish to do that, you can also update to the latest netCDF-C *or* the 
latest HDF5; this will solve the issue you are observing.

I hope this helps,

-Ward

> Hello,
> 
> To my dismay, I've been trying for quite a long time to install the
> netcdf-4 library without success.
> 
> I tried different options, and remain stuck to the error in config:
> 
> /checking for library containing H5Fflush... no//
> //configure: error: Can't find or link to the hdf5 library. Use
> --disable-netcdf-4, or see config.log for errors./
> 
> I tried to implement the guidelines from
> 
> https://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg11836.html
> 
> Without success, the problem remains. Any idea would be welcome.
> 
> Thanks a lot
> 
> Paloma
> 
> ps -please find config.log in attachement
> 
> The machine OS is Ubuntu 16.04 / 64 bits
> 
> The hdf5 version *hdf5-1.8.13* was installed with parameters:
> 
> /export CC=mpicc//
> //export CXX=g++//
> //export FC=gfortran//
> //export F77=gfortran//
> //export F90=gfortran//
> //export NCDIR="/home/paloma/src/svn_coherens/V2.11/lib/netcdf"//
> //export HDF5="/home/paloma/src/svn_coherens/V2.11/lib/hdf5"//
> //export ZLIB="/home/paloma/src/svn_coherens/V2.11/lib/zlib"//
> //
> //export CPPFLAGS="-I${HDF5}/include -I${ZLIB}/include
> -I${NETCDF_LIB}/include"//
> //export LDFLAGS="-L${HDF5}/lib -L${ZLIB}/lib -L${NETCDF_LIB}/lib"//
> //export LD_LIBRARY_PATH="${HDF5}/lib:${ZLIB}/lib:${NETCDF_LIB}/lib:"//
> //
> //./configure --prefix=${HDF5}  --enable-shared --enable-fortran
> --enable-cxx --enable-parallel//
> //make//
> //make check//
> //make install/
> 
> And *netcdf-c-4.4.1* with parameters:
> 
> /export CC=mpicc//
> //export CXX=g++//
> //export FC=gfortran//
> //export F77=gfortran//
> //export F90=gfortran//
> //export NCDIR="/home/paloma/src/svn_coherens/V2.11/lib/netcdf"//
> //export HDF5="/home/paloma/src/svn_coherens/V2.11/lib/HDF5"//
> //export ZLIB="/home/paloma/src/svn_coherens/V2.11/lib/zlib"//
> //
> //export CPPFLAGS="-I${HDF5}/include -I${ZLIB}/include -I${NCDIR}/include"//
> //export LDFLAGS="-L${HDF5}/lib -L${ZLIB}/lib -L${NCDIR}/lib"//
> //export LD_LIBRARY_PATH="${HDF5}/lib:${ZLIB}/lib:${NCDIR}/lib:"//
> //
> //LIBS=-ldl ./configure --prefix=${NCDIR}  --enable-shared
> --enable-parallel-tests/
> 
> --
> 
> 
> <https://www.naturalsciences.be/en/science/do/98>
> <https://www.naturalsciences.be/en/science/do/98>
> <https://www.naturalsciences.be/en/science/do/98>
> <https://www.naturalsciences.be/en/science/do/98>
> <https://www.naturalsciences.be/en/science/do/98>
> <https://www.naturalsciences.be/en/science/do/98>
> <https://www.naturalsciences.be/en/science/do/98>
> <https://www.naturalsciences.be/en/science/do/98>
> /<https://www.naturalsciences.be/en/science/do/98>
> /



Ticket Details
===================
Ticket ID: NQT-973003
Department: Support netCDF
Priority: Normal
Status: Closed
===================
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