Hello, Does the error occur if you run 'make -j 16 && make check' instead of 'make -j16 check' ? There are issues we've identified with hdf5 1.10.x, and there are also known issues when running the netCDF tests in parallel; it is unclear which is causing the issue described below. If the issue persists when running the tests in a serial fashion, can you provide the config.log generated when you ran configure? If the issue goes away, we can conclude that it was a race condition (that we are hoping to address in the next release). Thanks, have a great day, -Ward > Hello, > > I'm trying to build NetCDF 4.4.1 with HDF5 1.10.0-patch1 and GCC 6.1.0, but > `make -j16 check` fails during h5_test: > > > ========================================== > netCDF 4.4.1: h5_test/test-suite.log > ========================================== > > # TOTAL: 26 > # PASS: 24 > # SKIP: 0 > # XFAIL: 0 > # FAIL: 2 > # XPASS: 0 > # ERROR: 0 > > .. contents:: :depth: 2 > > FAIL: tst_h_rd_cmp > ================== > > HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0: > #000: H5F.c line 579 in H5Fopen(): unable to open file > major: File accessibilty > minor: Unable to open file > #001: H5Fint.c line 1168 in H5F_open(): unable to lock the file or initialize > file structure > major: File accessibilty > minor: Unable to open file > #002: H5FD.c line 1821 in H5FD_lock(): driver lock request failed > major: Virtual File Layer > minor: Can't update object > #003: H5FDsec2.c line 939 in H5FD_sec2_lock(): unable to flock file, errno = > 11, error message = 'Resource temporarily unavailable' > major: File accessibilty > minor: Bad file ID accessed > > *** Checking HDF5 compound types (we're almost there kids). > *** Checking packing of HDF5 compound types...Sorry! Unexpected result, > tst_h_rd_cmp.c, line: 33 > FAIL tst_h_rd_cmp (exit status: 2) > > FAIL: tst_h_dimscales > ===================== > > HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0: > #000: H5F.c line 491 in H5Fcreate(): unable to create file > major: File accessibilty > minor: Unable to open file > #001: H5Fint.c line 1168 in H5F_open(): unable to lock the file or initialize > file structure > major: File accessibilty > minor: Unable to open file > #002: H5FD.c line 1821 in H5FD_lock(): driver lock request failed > major: Virtual File Layer > minor: Can't update object > #003: H5FDsec2.c line 939 in H5FD_sec2_lock(): unable to flock file, errno = > 11, error message = 'Resource temporarily unavailable' > major: File accessibilty > minor: Bad file ID accessed > > *** Checking HDF5 dimension scales. > *** Creating simple dimension scales file...Sorry! Unexpected result, > tst_h_dimscales.c, line: 140 > FAIL tst_h_dimscales (exit status: 2) > > > Adam J. Stewart > Assistant Systems Administrator > Laboratory Computing Resource Center > Computing, Environment and Life Sciences > Argonne National Laboratory > > Ticket Details =================== Ticket ID: AER-807569 Department: Support netCDF Priority: Normal Status: Closed =================== NOTE: All email exchanges with Unidata User Support are recorded in the Unidata inquiry tracking system and then made publicly available through the web. If you do not want to have your interactions made available in this way, you must let us know in each email you send to us.
NOTE: All email exchanges with Unidata User Support are recorded in the Unidata inquiry tracking system and then made publicly available through the web. If you do not want to have your interactions made available in this way, you must let us know in each email you send to us.