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[netCDF #AER-807569]: NetCDF make check fails h5_test

Hello,

Does the error occur if you run 'make -j 16 && make check' instead of 'make 
-j16 check' ?  There are issues we've identified with hdf5 1.10.x, and there 
are also known issues when running the netCDF tests in parallel; it is unclear 
which is causing the issue described below.  If the issue persists when running 
the tests in a serial fashion, can you provide the config.log generated when 
you ran configure?  If the issue goes away, we can conclude that it was a race 
condition (that we are hoping to address in the next release).

Thanks, have a great day,

-Ward

> Hello,
> 
> I'm trying to build NetCDF 4.4.1 with HDF5 1.10.0-patch1 and GCC 6.1.0, but 
> `make -j16 check` fails during h5_test:
> 
> 
> ==========================================
> netCDF 4.4.1: h5_test/test-suite.log
> ==========================================
> 
> # TOTAL: 26
> # PASS:  24
> # SKIP:  0
> # XFAIL: 0
> # FAIL:  2
> # XPASS: 0
> # ERROR: 0
> 
> .. contents:: :depth: 2
> 
> FAIL: tst_h_rd_cmp
> ==================
> 
> HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
> #000: H5F.c line 579 in H5Fopen(): unable to open file
> major: File accessibilty
> minor: Unable to open file
> #001: H5Fint.c line 1168 in H5F_open(): unable to lock the file or initialize 
> file structure
> major: File accessibilty
> minor: Unable to open file
> #002: H5FD.c line 1821 in H5FD_lock(): driver lock request failed
> major: Virtual File Layer
> minor: Can't update object
> #003: H5FDsec2.c line 939 in H5FD_sec2_lock(): unable to flock file, errno = 
> 11, error message = 'Resource temporarily unavailable'
> major: File accessibilty
> minor: Bad file ID accessed
> 
> *** Checking HDF5 compound types (we're almost there kids).
> *** Checking packing of HDF5 compound types...Sorry! Unexpected result, 
> tst_h_rd_cmp.c, line: 33
> FAIL tst_h_rd_cmp (exit status: 2)
> 
> FAIL: tst_h_dimscales
> =====================
> 
> HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
> #000: H5F.c line 491 in H5Fcreate(): unable to create file
> major: File accessibilty
> minor: Unable to open file
> #001: H5Fint.c line 1168 in H5F_open(): unable to lock the file or initialize 
> file structure
> major: File accessibilty
> minor: Unable to open file
> #002: H5FD.c line 1821 in H5FD_lock(): driver lock request failed
> major: Virtual File Layer
> minor: Can't update object
> #003: H5FDsec2.c line 939 in H5FD_sec2_lock(): unable to flock file, errno = 
> 11, error message = 'Resource temporarily unavailable'
> major: File accessibilty
> minor: Bad file ID accessed
> 
> *** Checking HDF5 dimension scales.
> *** Creating simple dimension scales file...Sorry! Unexpected result, 
> tst_h_dimscales.c, line: 140
> FAIL tst_h_dimscales (exit status: 2)
> 
> 
> Adam J. Stewart
> Assistant Systems Administrator
> Laboratory Computing Resource Center
> Computing, Environment and Life Sciences
> Argonne National Laboratory
> 
> 


Ticket Details
===================
Ticket ID: AER-807569
Department: Support netCDF
Priority: Normal
Status: Closed
===================
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