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[netCDF #VGX-202851]: Error: netcdf.inc

Hello,

Unfortunately I don't know enough about WRF's packaging/build system, so I 
can't speak as to what might be going wrong.  What version of netCDF-C and 
netCDF-Fortran are WRF trying to build?  Additionally, as it is complaining 
that `/home/fahad/Documents/WRF/WRFV3/netcdf_links/include/netcdf.inc`.  Does 
this file exist, or is it correct that the file is not there?

You may have better luck contacting the WRF development/support team, but if 
you can answer the questions above I will do my best to provide any insight 
that I can.

Thank you,

-Ward


> Full Name: Madhu Atyam
> Email Address: address@hidden
> Organization: Saudi Geophysical Consulting Co
> Package Version: 4.4.1
> Operating System: ubuntu
> Hardware:
> Description of problem: Hi support!
> 
> I am trying to configure the WRF and while doing it, i am stuck with this 
> error.
> 
> Error : Not found 
> /home/fahad/Documents/WRF/WRFV3/netcdf_links/include/netcdf.inc
> Please check this installation of NetCDF and re-run this configure script
> 
> Could you please help me. Please find the below config log for your 
> assessment,
> 
> fahad@fahad-Satellite-L745:~/Documents/WRF/WRFV3$ ./configure
> checking for perl5... no
> checking for perl... found /usr/bin/perl (perl)
> ** There is an existing ./netcdf_links file. Should I use? [y]
> y
> Will use NETCDF in dir: /home/fahad/Documents/WRF/WRFV3/netcdf_links
> HDF5 not set in environment. Will configure WRF for use without.
> PHDF5 not set in environment. Will configure WRF for use without.
> Will use 'time' to report timing information
> $JASPERLIB or $JASPERINC not found in environment, configuring to build 
> without grib2 I/O...
> ------------------------------------------------------------------------
> Please select from among the following Linux x86_64 options:
> 
> 1. (serial)   2. (smpar)   3. (dmpar)   4. (dm+sm)   PGI (pgf90/gcc)
> 5. (serial)   6. (smpar)   7. (dmpar)   8. (dm+sm)   PGI (pgf90/pgcc): SGI MPT
> 9. (serial)  10. (smpar)  11. (dmpar)  12. (dm+sm)   PGI (pgf90/gcc): PGI 
> accelerator
> 13. (serial)  14. (smpar)  15. (dmpar)  16. (dm+sm)   INTEL (ifort/icc)
> 17. (dm+sm)   INTEL (ifort/icc): Xeon Phi (MIC architecture)
> 18. (serial)  19. (smpar)  20. (dmpar)  21. (dm+sm)   INTEL (ifort/icc): Xeon 
> (SNB with AVX mods)
> 22. (serial)  23. (smpar)  24. (dmpar)  25. (dm+sm)   INTEL (ifort/icc): SGI 
> MPT
> 26. (serial)  27. (smpar)  28. (dmpar)  29. (dm+sm)   INTEL (ifort/icc): IBM 
> POE
> 30. (serial)               31. (dmpar)                PATHSCALE 
> (pathf90/pathcc)
> 32. (serial)  33. (smpar)  34. (dmpar)  35. (dm+sm)   GNU (gfortran/gcc)
> 36. (serial)  37. (smpar)  38. (dmpar)  39. (dm+sm)   IBM (xlf90_r/cc_r)
> 40. (serial)  41. (smpar)  42. (dmpar)  43. (dm+sm)   PGI (ftn/gcc): Cray XC 
> CLE
> 44. (serial)  45. (smpar)  46. (dmpar)  47. (dm+sm)   CRAY CCE (ftn/cc): Cray 
> XE and XC
> 48. (serial)  49. (smpar)  50. (dmpar)  51. (dm+sm)   INTEL (ftn/icc): Cray XC
> 52. (serial)  53. (smpar)  54. (dmpar)  55. (dm+sm)   PGI (pgf90/pgcc)
> 56. (serial)  57. (smpar)  58. (dmpar)  59. (dm+sm)   PGI (pgf90/gcc): 
> -f90=pgf90
> 60. (serial)  61. (smpar)  62. (dmpar)  63. (dm+sm)   PGI (pgf90/pgcc): 
> -f90=pgf90
> 64. (serial)  65. (smpar)  66. (dmpar)  67. (dm+sm)   INTEL (ifort/icc): 
> HSW/BDW
> 68. (serial)  69. (smpar)  70. (dmpar)  71. (dm+sm)   INTEL (ifort/icc): KNL 
> MIC
> 
> Enter selection [1-71] : 34
> ------------------------------------------------------------------------
> Compile for nesting? (1=basic, 2=preset moves, 3=vortex following) [default 
> 1]: 1
> 
> Configuration successful!
> ------------------------------------------------------------------------
> testing for MPI_Comm_f2c and MPI_Comm_c2f
> MPI_Comm_f2c and MPI_Comm_c2f are not supported
> testing for fseeko and fseeko64
> fseeko64 is supported
> ------------------------------------------------------------------------
> 
> # Settings for    Linux x86_64 ppc64le, gfortran compiler with gcc   (dmpar)
> #
> DESCRIPTION     =       GNU ($SFC/$SCC)
> DMPARALLEL      =        1
> OMPCPP          =       # -D_OPENMP
> OMP             =       # -fopenmp
> OMPCC           =       # -fopenmp
> SFC             =       gfortran
> SCC             =       gcc
> CCOMP           =       gcc
> DM_FC           =       mpif90 -f90=$(SFC)
> DM_CC           =       mpicc -cc=$(SCC)
> FC              =       time $(DM_FC)
> CC              =       $(DM_CC) -DFSEEKO64_OK
> LD              =       $(FC)
> RWORDSIZE       =       $(NATIVE_RWORDSIZE)
> PROMOTION       =       #-fdefault-real-8
> ARCH_LOCAL      =       -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM
> CFLAGS_LOCAL    =       -w -O3 -c
> LDFLAGS_LOCAL   =
> CPLUSPLUSLIB    =
> ESMF_LDFLAG     =       $(CPLUSPLUSLIB)
> FCOPTIM         =       -O2 -ftree-vectorize -funroll-loops
> FCREDUCEDOPT  =       $(FCOPTIM)
> FCNOOPT               =       -O0
> FCDEBUG         =       # -g $(FCNOOPT) # -ggdb -fbacktrace 
> -fcheck=bounds,do,mem,pointer -ffpe-trap=invalid,zero,overflow
> FORMAT_FIXED    =       -ffixed-form
> FORMAT_FREE     =       -ffree-form -ffree-line-length-none
> FCSUFFIX        =
> BYTESWAPIO      =       -fconvert=big-endian -frecord-marker=4
> FCBASEOPTS_NO_G =       -w $(FORMAT_FREE) $(BYTESWAPIO)
> FCBASEOPTS      =       $(FCBASEOPTS_NO_G) $(FCDEBUG)
> MODULE_SRCH_FLAG =
> TRADFLAG        =      -traditional
> CPP             =      /lib/cpp -P
> AR              =      ar
> ARFLAGS         =      ru
> M4              =      m4 -G
> RANLIB          =      ranlib
> RLFLAGS               =
> CC_TOOLS        =      $(SCC)
> 
> ###########################################################
> ######################
> # POSTAMBLE
> 
> FGREP = fgrep -iq
> 
> ARCHFLAGS       =    $(COREDEFS) -DIWORDSIZE=$(IWORDSIZE) 
> -DDWORDSIZE=$(DWORDSIZE) -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=$(LWORDSIZE) \
> $(ARCH_LOCAL) \
> $(DA_ARCHFLAGS) \
> -DDM_PARALLEL \
> \
> -DNETCDF \
> \
> \
> \
> \
> \
> \
> \
> \
> \
> \
> -DUSE_ALLOCATABLES \
> -DGRIB1 \
> -DINTIO \
> -DKEEP_INT_AROUND \
> -DLIMIT_ARGS \
> -DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
> -DMAX_DOMAINS_F=$(MAX_DOMAINS) \
> -DMAX_HISTORY=$(MAX_HISTORY) \
> -DNMM_NEST=$(WRF_NMM_NEST)
> CFLAGS          =    $(CFLAGS_LOCAL) -DDM_PARALLEL  \
> -DMAX_HISTORY=$(MAX_HISTORY) -DNMM_CORE=$(WRF_NMM_CORE)
> FCFLAGS         =    $(FCOPTIM) $(FCBASEOPTS)
> ESMF_LIB_FLAGS  =
> # ESMF 5 -- these are defined in esmf.mk, included above
> ESMF_IO_LIB     =    -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
> ESMF_IO_LIB_EXT =    -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
> INCLUDE_MODULES =    $(MODULE_SRCH_FLAG) \
> $(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
> -I$(WRF_SRC_ROOT_DIR)/main \
> -I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
> -I$(WRF_SRC_ROOT_DIR)/external/io_int \
> -I$(WRF_SRC_ROOT_DIR)/frame \
> -I$(WRF_SRC_ROOT_DIR)/share \
> -I$(WRF_SRC_ROOT_DIR)/phys \
> -I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \
> -I$(NETCDFPATH)/include \
> 
> REGISTRY        =    Registry
> CC_TOOLS_CFLAGS = -DNMM_CORE=$(WRF_NMM_CORE)
> 
> LIB_BUNDLED     = \
> $(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5/libfftpack.a \
> $(WRF_SRC_ROOT_DIR)/external/io_grib1/libio_grib1.a \
> $(WRF_SRC_ROOT_DIR)/external/io_grib_share/libio_grib_share.a \
> $(WRF_SRC_ROOT_DIR)/external/io_int/libwrfio_int.a \
> $(ESMF_IO_LIB) \
> $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a \
> $(WRF_SRC_ROOT_DIR)/frame/module_internal_header_util.o \
> $(WRF_SRC_ROOT_DIR)/frame/pack_utils.o
> 
> LIB_EXTERNAL    = \
> -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf 
> -L/home/fahad/Documents/WRF/WRFV3/netcdf_links/lib
> 
> LIB             =    $(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL) 
> $(LIB_WRF_HYDRO)
> LDFLAGS         =    $(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL)
> ENVCOMPDEFS     =
> WRF_CHEM      =       0
> CPPFLAGS        =    $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG)
> NETCDFPATH      =    /home/fahad/Documents/WRF/WRFV3/netcdf_links
> HDF5PATH        =
> WRFPLUSPATH     =
> PNETCDFPATH     =
> 
> bundled:  io_only
> external: io_only $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a 
> gen_comms_rsllite module_dm_rsllite $(ESMF_TARGET)
> io_only:  esmf_time wrfio_nf   \
> wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int fftpack
> 
> 
> ######################
> ------------------------------------------------------------------------
> Settings listed above are written to configure.wrf.
> If you wish to change settings, please edit that file.
> If you wish to change the default options, edit the file:
> arch/configure_new.defaults
> 
> Error : Not found 
> /home/fahad/Documents/WRF/WRFV3/netcdf_links/include/netcdf.inc
> Please check this installation of NetCDF and re-run this configure script
> 
> ./configure: 720: exit: Illegal number: -1
> 
> 
> 
> 


Ticket Details
===================
Ticket ID: VGX-202851
Department: Support netCDF
Priority: Normal
Status: Closed
===================
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