Hello, Thank you for providing such detailed information. It appears that, when compiling netcdf fortran, it is not trying to link against the netcdf-c library or the other dependencies. Try making the following modification; add a LIBS stanza to your configure statement, along with CPPFLAGS and LDFLAGS. It should look as follows: LIBS="-lhdf5 -lhdf5_hl -lnetcdf" This will tell the linker to explicitely link against these libraries, which should resolve the undefined_reference errors. Note you may also need to set your LD_LIBRARY_PATH when you run 'make check', as your libraries are installed in non-standard locations. I hope this helps, let me know if it doesn't or if I can provide further assistance. Have a great day! -Ward > Hello there, > > I hope this email finds you well. > > I'm writing you because I don't manage to get netcdf-fortran-4.4.1 > properly compiled in our cluster. > > In fact, I have read much information in your webpage (which is really > helpful) but still I cannot manage to compile this software. > > I am compiling with GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4). > I have previously installed hdf5-1.8.13, netcdf-c-4.3.3-rc1, > netcdf-cxx4-4.2 all of them without troubles. > > Although I manage to ./configure netcdf-fortran-4.4.1, when I make check > I get the next error: > > . > . > . > ../fortran/.libs/libnetcdff.so: undefined reference to `nc__create_mp' > collect2: ld returned 1 exit status > make[2]: *** [nf_test] Error 1 > make[2]: Leaving directory > `/data/users/carlos/software/netCDF/netcdf-fortran-4.4.1/nf_test' > make[1]: *** [check-am] Error 2 > make[1]: Leaving directory > `/data/users/carlos/software/netCDF/netcdf-fortran-4.4.1/nf_test' > make: *** [check-recursive] Error 1 > > I have read in your blog that it is convenient to check > ./fortran/.libs/libnetcdff.so with the next command readelf -Ws > libnetcdff.so | grep nf_open and also readelf -Ws libnetcdff.so.6.0.1 | > grep nf_open and I get: > > $ readelf -Ws libnetcdff.so.6.0.1 | grep nf_open > 294: 000000000000a590 228 FUNC GLOBAL DEFAULT 11 nf_open_ > 252: 000000000000a590 228 FUNC GLOBAL DEFAULT 11 nf_open_ > > and > > $ readelf -Ws libnetcdff.so | grep nf_open > 294: 000000000000a590 228 FUNC GLOBAL DEFAULT 11 nf_open_ > 252: 000000000000a590 228 FUNC GLOBAL DEFAULT 11 nf_open_ > > > > However, even if I do: make distclean and the configure and make and > make check and nothing works... > > I have copied and passed my configure instructions and my make > instructions as well as all the output. > > I hope you can help me. > > Thanks in advance. > > With kindest regards, > Carlos > > CPPFLAGS="-I/data/users/carlos/software/netCDF/installation/lib/include/" > LDFLAGS="-L/data/users/carlos/software/netCDF/installation/lib/lib/:/data/users/carlos/software/netCDF/installation/src/netcdf-cxx/lib/:/data/users/carlos/software/hdf5-1.8.13/installation/src/lib/" > ./configure > --prefix=/data/users/carlos/software/netCDF/installation/src/netcdf-fortran/ > > configure: netCDF-Fortran 4.4.1 > checking build system type... x86_64-unknown-linux-gnu > checking host system type... x86_64-unknown-linux-gnu > checking target system type... x86_64-unknown-linux-gnu > checking for a BSD-compatible install... /usr/bin/install -c > checking whether build environment is sane... yes > checking for a thread-safe mkdir -p... /bin/mkdir -p > checking for gawk... gawk > checking whether make sets $(MAKE)... yes > checking whether make supports nested variables... yes > checking whether to enable maintainer-specific portions of Makefiles... no > configure: checking user options > checking whether extra valgrind tests should be run... no > checking whether parallel IO tests should be run... no > checking whether netCDF extra tests should be run (developers only)... no > checking for doxygen... no > configure: WARNING: Doxygen not found - documentation will not be built > checking for dot... dot > configure: finding C compiler > checking for gcc... gcc > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ISO C89... none needed > checking whether gcc understands -c and -o together... yes > checking for style of include used by make... GNU > checking dependency style of gcc... gcc3 > checking for an ANSI C-conforming const... yes > configure: finding Fortran compiler > checking for gfortran... gfortran > checking whether we are using the GNU Fortran compiler... yes > checking whether gfortran accepts -g... yes > checking for gfortran... gfortran > checking whether we are using the GNU Fortran 77 compiler... yes > checking whether gfortran accepts -g... yes > checking whether Fortran compiler is checked for ISO_C_BINDING > support... yes > checking for Fortran flag to compile .f90 files... none > checking fortran 90 modules inclusion flag... -I > checking if Fortran compiler supports Fortran 2003 ISO_C_BINDING... yes > checking if Fortran compiler supports Fortran 2008 ISO_FORTRAN_ENV > additions... no > checking if Fortran compiler supports TS29113 standard extension... no > checking whether F03 native code is desired... yes > checking whether fortran type sizes should be checked... yes > checking whether large file (> 2GB) tests should be run... no > checking whether benchmaks should be run (experimental)... no > checking where to put large temp files if large file tests are run... . > configure: setting up libtool > checking how to print strings... printf > checking for a sed that does not truncate output... /bin/sed > checking for grep that handles long lines and -e... /bin/grep > checking for egrep... /bin/grep -E > checking for fgrep... /bin/grep -F > checking for ld used by gcc... /usr/bin/ld > checking if the linker (/usr/bin/ld) is GNU ld... yes > checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B > checking the name lister (/usr/bin/nm -B) interface... BSD nm > checking whether ln -s works... yes > checking the maximum length of command line arguments... 3458764513820540925 > checking whether the shell understands some XSI constructs... yes > checking whether the shell understands "+="... yes > checking how to convert x86_64-unknown-linux-gnu file names to > x86_64-unknown-linux-gnu format... func_convert_file_noop > checking how to convert x86_64-unknown-linux-gnu file names to toolchain > format... func_convert_file_noop > checking for /usr/bin/ld option to reload object files... -r > checking for objdump... objdump > checking how to recognize dependent libraries... pass_all > checking for dlltool... no > checking how to associate runtime and link libraries... printf %s\n > checking for ar... ar > checking for archiver @FILE support... @ > checking for strip... strip > checking for ranlib... ranlib > checking command to parse /usr/bin/nm -B output from gcc object... ok > checking for sysroot... no > checking for mt... no > checking if : is a manifest tool... no > checking how to run the C preprocessor... gcc -E > checking for ANSI C header files... yes > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for unistd.h... yes > checking for dlfcn.h... yes > checking for objdir... .libs > checking if gcc supports -fno-rtti -fno-exceptions... no > checking for gcc option to produce PIC... -fPIC -DPIC > checking if gcc PIC flag -fPIC -DPIC works... yes > checking if gcc static flag -static works... no > checking if gcc supports -c -o file.o... yes > checking if gcc supports -c -o file.o... (cached) yes > checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports > shared libraries... yes > checking whether -lc should be explicitly linked in... no > checking dynamic linker characteristics... GNU/Linux ld.so > checking how to hardcode library paths into programs... immediate > checking whether stripping libraries is possible... yes > checking if libtool supports shared libraries... yes > checking whether to build shared libraries... yes > checking whether to build static libraries... yes > checking if libtool supports shared libraries... yes > checking whether to build shared libraries... yes > checking whether to build static libraries... yes > checking for gfortran option to produce PIC... -fPIC > checking if gfortran PIC flag -fPIC works... yes > checking if gfortran static flag -static works... no > checking if gfortran supports -c -o file.o... yes > checking if gfortran supports -c -o file.o... (cached) yes > checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) > supports shared libraries... yes > checking dynamic linker characteristics... (cached) GNU/Linux ld.so > checking how to hardcode library paths into programs... immediate > checking if libtool supports shared libraries... yes > checking whether to build shared libraries... yes > checking whether to build static libraries... yes > checking for gfortran option to produce PIC... -fPIC > checking if gfortran PIC flag -fPIC works... yes > checking if gfortran static flag -static works... no > checking if gfortran supports -c -o file.o... yes > checking if gfortran supports -c -o file.o... (cached) yes > checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) > supports shared libraries... yes > checking dynamic linker characteristics... (cached) GNU/Linux ld.so > checking how to hardcode library paths into programs... immediate > configure: finding other utilities > configure: trying to set fortran flags for this platform > checking what FC is set to... gfortran > checking for special C compiler options needed for large files... no > checking for _FILE_OFFSET_BITS value needed for large files... no > checking for /usr/bin/nm... /usr/bin/nm -B > checking nm flags... > checking for C-equivalent to Fortran routine "SUB"... sub_ > checking for Fortran "byte"... yes > checking for Fortran "integer*2"... yes > checking if Fortran "byte" is C "signed char"... yes > checking if Fortran "byte" is C "short"... no > checking if Fortran "byte" is C "int"... no > checking if Fortran "byte" is C "long"... no > checking if Fortran "integer*2" is C "short"... yes > checking if Fortran "integer*2" is C "int"... no > checking if Fortran "integer*2" is C "long"... no > checking if Fortran "integer" is C "int"... yes > checking if Fortran "real" is C "float"... yes > checking if Fortran "doubleprecision" is C "double"... yes > checking for Fortran-equivalent to netCDF "byte"... byte > checking for Fortran-equivalent to netCDF "short"... integer*2 > checking whether extra example tests should be run... no > checking whether a win32 DLL is desired... no > configure: checking types, headers, and functions > checking netcdf.h usability... yes > checking netcdf.h presence... yes > checking for netcdf.h... yes > checking for library containing nc_open... no > checking for nc_def_opaque... no > checking for nccreate... no > checking for nc_set_log_level... no > checking for oc_open... no > checking for nc_use_parallel_enabled... no > checking netCDF v2 API present... no > checking netCDF-4 present... no > checking for stdlib.h... (cached) yes > checking for sys/types.h... (cached) yes > checking sys/param.h usability... yes > checking sys/param.h presence... yes > checking for sys/param.h... yes > checking locale.h usability... yes > checking locale.h presence... yes > checking for locale.h... yes > checking stdio.h usability... yes > checking stdio.h presence... yes > checking for stdio.h... yes > checking stdarg.h usability... yes > checking stdarg.h presence... yes > checking for stdarg.h... yes > checking errno.h usability... yes > checking errno.h presence... yes > checking for errno.h... yes > checking ctype.h usability... yes > checking ctype.h presence... yes > checking for ctype.h... yes > checking fcntl.h usability... yes > checking fcntl.h presence... yes > checking for fcntl.h... yes > checking malloc.h usability... yes > checking malloc.h presence... yes > checking for malloc.h... yes > checking for stdlib.h... (cached) yes > checking for string.h... (cached) yes > checking for strings.h... (cached) yes > checking for unistd.h... (cached) yes > checking for sys/stat.h... (cached) yes > checking getopt.h usability... yes > checking getopt.h presence... yes > checking for getopt.h... yes > checking sys/time.h usability... yes > checking sys/time.h presence... yes > checking for sys/time.h... yes > checking sys/resource.h usability... yes > checking sys/resource.h presence... yes > checking for sys/resource.h... yes > checking for dirent.h that defines DIR... yes > checking for library containing opendir... none required > checking for ANSI C header files... (cached) yes > checking for sys/wait.h that is POSIX.1 compatible... yes > checking whether time.h and sys/time.h may both be included... yes > checking for vprintf... yes > checking for _doprnt... no > checking for stdbool.h that conforms to C99... yes > checking for _Bool... yes > checking for size_t... yes > checking for working alloca.h... yes > checking for alloca... yes > checking for size_t... (cached) yes > checking for off_t... yes > checking for ssize_t... yes > checking for ptrdiff_t... yes > checking for uchar... no > checking for longlong... no > checking whether char is unsigned... no > checking size of short... 2 > checking size of int... 4 > checking size of long... 8 > checking size of float... 4 > checking size of double... 8 > checking size of off_t... 8 > checking size of size_t... 8 > checking size of ptrdiff_t... 8 > configure: generating header files and makefiles > checking that generated files are newer than configure... done > configure: creating ./config.status > config.status: creating Makefile > config.status: creating nf-config > config.status: creating netcdf-fortran.pc > config.status: creating docs/Makefile > config.status: creating libsrc/Makefile > config.status: creating fortran/Makefile > config.status: creating nf_test/Makefile > config.status: creating nf03_test/Makefile > config.status: creating CMakeExtras/Makefile > config.status: creating examples/Makefile > config.status: creating examples/F90/Makefile > config.status: creating examples/F77/Makefile > config.status: creating config.h > config.status: creating libsrc/nfconfig1.inc > config.status: executing depfiles commands > config.status: executing libtool commands > > > > > MAKE CHECK > > $ make check > Making check in fortran > make[1]: Entering directory > `/data/users/carlos/software/netCDF/netcdf-fortran-4.4.1/fortran' > gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 > -c -o module_netcdf_nc_data.o module_netcdf_nc_data.F90 > gfortran -g -O2 -c -o module_netcdf_nc_interfaces.o > module_netcdf_nc_interfaces.f90 > gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 > -c -o module_netcdf_nf_data.o module_netcdf_nf_data.F90 > gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 > -c -o module_netcdf_nf_interfaces.o module_netcdf_nf_interfaces.F90 > gfortran -g -O2 -c -o module_netcdf_f03.o module_netcdf_f03.f90 > gfortran -g -O2 -c -o typeSizes.o typeSizes.f90 > gfortran -g -O2 -c -o netcdf.o netcdf.f90 > echo '! NetCDF-3.' > netcdf.inc > cat ../fortran/netcdf3.inc >> netcdf.inc > make check-am > make[2]: Entering directory > `/data/users/carlos/software/netCDF/netcdf-fortran-4.4.1/fortran' > /bin/sh ../libtool --tag=FC --mode=compile gfortran -g -O2 -c -o > typeSizes.lo typeSizes.f90 > libtool: compile: gfortran -g -O2 -c typeSizes.f90 -fPIC -o > .libs/typeSizes.o > libtool: compile: gfortran -g -O2 -c typeSizes.f90 -o typeSizes.o > >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -DHAVE_CONFIG_H > -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 > -c -o module_netcdf_nc_data.lo module_netcdf_nc_data.F90 > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > module_netcdf_nc_data.F90 -fPIC -o .libs/module_netcdf_nc_data.o > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > module_netcdf_nc_data.F90 -o module_netcdf_nc_data.o >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -g -O2 -c -o > module_netcdf_nc_interfaces.lo module_netcdf_nc_interfaces.f90 > libtool: compile: gfortran -g -O2 -c module_netcdf_nc_interfaces.f90 > -fPIC -o .libs/module_netcdf_nc_interfaces.o > libtool: compile: gfortran -g -O2 -c module_netcdf_nc_interfaces.f90 -o > module_netcdf_nc_interfaces.o >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -DHAVE_CONFIG_H > -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 > -c -o module_netcdf_nf_data.lo module_netcdf_nf_data.F90 > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > module_netcdf_nf_data.F90 -fPIC -o .libs/module_netcdf_nf_data.o > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > module_netcdf_nf_data.F90 -o module_netcdf_nf_data.o >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -DHAVE_CONFIG_H > -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 > -c -o module_netcdf_nf_interfaces.lo module_netcdf_nf_interfaces.F90 > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > module_netcdf_nf_interfaces.F90 -fPIC -o > .libs/module_netcdf_nf_interfaces.o > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > module_netcdf_nf_interfaces.F90 -o module_netcdf_nf_interfaces.o > >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -g -O2 -c -o > module_netcdf_f03.lo module_netcdf_f03.f90 > libtool: compile: gfortran -g -O2 -c module_netcdf_f03.f90 -fPIC -o > .libs/module_netcdf_f03.o > libtool: compile: gfortran -g -O2 -c module_netcdf_f03.f90 -o > module_netcdf_f03.o >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -DHAVE_CONFIG_H > -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 > -c -o nf_attio.lo nf_attio.F90 > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > nf_attio.F90 -fPIC -o .libs/nf_attio.o > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > nf_attio.F90 -o nf_attio.o >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -DHAVE_CONFIG_H > -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 > -c -o nf_control.lo nf_control.F90 > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > nf_control.F90 -fPIC -o .libs/nf_control.o > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > nf_control.F90 -o nf_control.o >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -g -O2 -c -o > nf_dim.lo nf_dim.f90 > libtool: compile: gfortran -g -O2 -c nf_dim.f90 -fPIC -o .libs/nf_dim.o > libtool: compile: gfortran -g -O2 -c nf_dim.f90 -o nf_dim.o >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -g -O2 -c -o > nf_misc.lo nf_misc.f90 > libtool: compile: gfortran -g -O2 -c nf_misc.f90 -fPIC -o .libs/nf_misc.o > libtool: compile: gfortran -g -O2 -c nf_misc.f90 -o nf_misc.o > >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -g -O2 -c -o > nf_genatt.lo nf_genatt.f90 > libtool: compile: gfortran -g -O2 -c nf_genatt.f90 -fPIC -o > .libs/nf_genatt.o > libtool: compile: gfortran -g -O2 -c nf_genatt.f90 -o nf_genatt.o > >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -g -O2 -c -o > nf_geninq.lo nf_geninq.f90 > libtool: compile: gfortran -g -O2 -c nf_geninq.f90 -fPIC -o > .libs/nf_geninq.o > libtool: compile: gfortran -g -O2 -c nf_geninq.f90 -o nf_geninq.o > >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -g -O2 -c -o > nf_genvar.lo nf_genvar.f90 > libtool: compile: gfortran -g -O2 -c nf_genvar.f90 -fPIC -o > .libs/nf_genvar.o > libtool: compile: gfortran -g -O2 -c nf_genvar.f90 -o nf_genvar.o > >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -DHAVE_CONFIG_H > -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 > -c -o nf_vario.lo nf_vario.F90 > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > nf_vario.F90 -fPIC -o .libs/nf_vario.o > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > nf_vario.F90 -o nf_vario.o >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -DHAVE_CONFIG_H > -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 > -c -o nf_var1io.lo nf_var1io.F90 > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > nf_var1io.F90 -fPIC -o .libs/nf_var1io.o > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > nf_var1io.F90 -o nf_var1io.o >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -DHAVE_CONFIG_H > -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 > -c -o nf_varaio.lo nf_varaio.F90 > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > nf_varaio.F90 -fPIC -o .libs/nf_varaio.o > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > nf_varaio.F90 -o nf_varaio.o >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -DHAVE_CONFIG_H > -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 > -c -o nf_varmio.lo nf_varmio.F90 > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > nf_varmio.F90 -fPIC -o .libs/nf_varmio.o > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > nf_varmio.F90 -o nf_varmio.o >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -DHAVE_CONFIG_H > -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 > -c -o nf_varsio.lo nf_varsio.F90 > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > nf_varsio.F90 -fPIC -o .libs/nf_varsio.o > libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 -c > nf_varsio.F90 -o nf_varsio.o >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -g -O2 -c -o > netcdf.lo netcdf.f90 > libtool: compile: gfortran -g -O2 -c netcdf.f90 -fPIC -o .libs/netcdf.o > libtool: compile: gfortran -g -O2 -c netcdf.f90 -o netcdf.o >/dev/null 2>&1 > /bin/sh ../libtool --tag=FC --mode=compile gfortran -g -O2 -c -o > netcdf3_file.lo netcdf3_file.f90 > libtool: compile: gfortran -g -O2 -c netcdf3_file.f90 -fPIC -o > .libs/netcdf3_file.o > libtool: compile: gfortran -g -O2 -c netcdf3_file.f90 -o netcdf3_file.o > >/dev/null 2>&1 > make[2]: Warning: File `netcdf.inc' has modification time 7.5e+02 s in > the future > /bin/sh ../libtool --tag=FC --mode=link gfortran -g -O2 > -version-number 6:0:1 > -L/data/users/carlos/software/netCDF/installation/lib/lib/:/data/users/carlos/software/netCDF/installation/src/netcdf-cxx/lib/:/data/users/carlos/software/hdf5-1.8.13/installation/src/lib/ > -o libnetcdff.la -rpath > /data/users/carlos/software/netCDF/installation/src/netcdf-fortran/lib > typeSizes.lo module_netcdf_nc_data.lo module_netcdf_nc_interfaces.lo > module_netcdf_nf_data.lo module_netcdf_nf_interfaces.lo > module_netcdf_f03.lo nf_attio.lo nf_control.lo nf_dim.lo nf_misc.lo > nf_genatt.lo nf_geninq.lo nf_genvar.lo nf_vario.lo nf_var1io.lo > nf_varaio.lo nf_varmio.lo nf_varsio.lo netcdf.lo netcdf3_file.lo > libtool: link: gfortran -shared -fPIC .libs/typeSizes.o > .libs/module_netcdf_nc_data.o .libs/module_netcdf_nc_interfaces.o > .libs/module_netcdf_nf_data.o .libs/module_netcdf_nf_interfaces.o > .libs/module_netcdf_f03.o .libs/nf_attio.o .libs/nf_control.o > .libs/nf_dim.o .libs/nf_misc.o .libs/nf_genatt.o .libs/nf_geninq.o > .libs/nf_genvar.o .libs/nf_vario.o .libs/nf_var1io.o .libs/nf_varaio.o > .libs/nf_varmio.o .libs/nf_varsio.o .libs/netcdf.o .libs/netcdf3_file.o > -L/data/users/carlos/software/netCDF/installation/lib/lib/:/data/users/carlos/software/netCDF/installation/src/netcdf-cxx/lib/:/data/users/carlos/software/hdf5-1.8.13/installation/src/lib/ > -O2 -Wl,-soname -Wl,libnetcdff.so.6 -o .libs/libnetcdff.so.6.0.1 > libtool: link: (cd ".libs" && rm -f "libnetcdff.so.6" && ln -s > "libnetcdff.so.6.0.1" "libnetcdff.so.6") > libtool: link: (cd ".libs" && rm -f "libnetcdff.so" && ln -s > "libnetcdff.so.6.0.1" "libnetcdff.so") > libtool: link: ar cru .libs/libnetcdff.a typeSizes.o > module_netcdf_nc_data.o module_netcdf_nc_interfaces.o > module_netcdf_nf_data.o module_netcdf_nf_interfaces.o > module_netcdf_f03.o nf_attio.o nf_control.o nf_dim.o nf_misc.o > nf_genatt.o nf_geninq.o nf_genvar.o nf_vario.o nf_var1io.o nf_varaio.o > nf_varmio.o nf_varsio.o netcdf.o netcdf3_file.o > libtool: link: ranlib .libs/libnetcdff.a > libtool: link: ( cd ".libs" && rm -f "libnetcdff.la" && ln -s > "../libnetcdff.la" "libnetcdff.la" ) > make[2]: warning: Clock skew detected. Your build may be incomplete. > make[2]: Leaving directory > `/data/users/carlos/software/netCDF/netcdf-fortran-4.4.1/fortran' > make[1]: Leaving directory > `/data/users/carlos/software/netCDF/netcdf-fortran-4.4.1/fortran' > Making check in nf_test > make[1]: Entering directory > `/data/users/carlos/software/netCDF/netcdf-fortran-4.4.1/nf_test' > make nf_test tst_f90 > make[2]: Entering directory > `/data/users/carlos/software/netCDF/netcdf-fortran-4.4.1/nf_test' > gfortran -I../fortran -I../fortran -g -O2 -c -o f03lib_f_interfaces.o > f03lib_f_interfaces.f90 > gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ > -I../fortran -I../fortran -g -O2 -c -o test_get.o test_get.F > gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ > -I../fortran -I../fortran -g -O2 -c -o test_put.o test_put.F > gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ > -I../fortran -I../fortran -g -O2 -c -o nf_error.o nf_error.F > gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ > -I../fortran -I../fortran -g -O2 -c -o nf_test.o nf_test.F > gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ > -I../fortran -I../fortran -g -O2 -c -o test_read.o test_read.F > gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ > -I../fortran -I../fortran -g -O2 -c -o test_write.o test_write.F > gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ > -I../fortran -I../fortran -g -O2 -c -o util.o util.F > depbase=`echo f03lib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ > gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc > -I/data/users/carlos/software/netCDF/installation/lib/include/ -g -O2 > -DLONGLONG_IS_LONG -MT f03lib.o -MD -MP -MF $depbase.Tpo -c -o f03lib.o > f03lib.c &&\ > mv -f $depbase.Tpo $depbase.Po > make[2]: Warning: File `../fortran/libnetcdff.la' has modification time > 7.8e+02 s in the future > /bin/sh ../libtool --tag=F77 --mode=link gfortran -I../fortran > -I../fortran -g -O2 > -L/data/users/carlos/software/netCDF/installation/lib/lib/:/data/users/carlos/software/netCDF/installation/src/netcdf-cxx/lib/:/data/users/carlos/software/hdf5-1.8.13/installation/src/lib/ > -o nf_test f03lib_f_interfaces.o test_get.o test_put.o nf_error.o > nf_test.o test_read.o test_write.o util.o f03lib.o ../fortran/libnetcdff.la > libtool: link: gfortran -I../fortran -I../fortran -g -O2 -o > .libs/nf_test f03lib_f_interfaces.o test_get.o test_put.o nf_error.o > nf_test.o test_read.o test_write.o util.o f03lib.o > -L/data/users/carlos/software/netCDF/installation/lib/lib/:/data/users/carlos/software/netCDF/installation/src/netcdf-cxx/lib/:/data/users/carlos/software/hdf5-1.8.13/installation/src/lib/ > ../fortran/.libs/libnetcdff.so -Wl,-rpath > -Wl,/data/users/carlos/software/netCDF/installation/src/netcdf-fortran/lib > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_vara_short' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_vara_short' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_att_float' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_vara_schar' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_attname' > ../fortran/.libs/libnetcdff.so: undefined reference to > `nc_set_default_format' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_dimname' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_vara_double' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_vara_text' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_var_schar' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_dim' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_vars_schar' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_nvars' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_varm_float' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_vara_float' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_vars_int' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_open' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_att_short' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_var1_short' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_var_float' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_set_base_pe' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_format' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_vara' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_varm_schar' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_varm_float' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_vars_short' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc__create' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_varndims' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_var1_float' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_attlen' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_def_var' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_vara_float' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_var_double' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_vars_float' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_vars' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc__open_mp' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_att_int' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_var1_int' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_dimlen' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_delete_mp' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_var1_short' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc__enddef' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_vars_schar' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_var1_double' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_varm_schar' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_copy_var' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_var1' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_varm_int' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_vara_int' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_vara_schar' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_base_pe' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_rename_var' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_redef' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_att' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_att_text' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_var1_text' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_var_short' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_vardimid' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_att_short' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_rename_att' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_vara_double' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc__open' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_varm_int' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_varm_short' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_vara_int' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_varm_double' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_ndims' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_vars_float' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_vara_text' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_varm_double' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_var_double' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_var1_int' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_var_int' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_vars' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_var_float' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_libvers' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_sync' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_var1_double' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_varm_short' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_att_schar' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_vars_int' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_att_double' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_var1_schar' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_var1' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_natts' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_vars_short' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_close' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_dimid' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_varm_text' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_unlimdim' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_del_att' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_att_int' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_abort' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_vars_text' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_def_dim' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_att_double' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_varm_text' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_vartype' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_var_text' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_strerror' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_varname' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_set_fill' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_enddef' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_var_schar' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_path' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_att_schar' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_var_short' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_att_float' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_varid' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_var1_schar' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_attid' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_vara' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_att_text' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_var1_text' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_create' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_rename_dim' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_vars_double' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_var1_float' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_copy_att' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_vars_text' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_varnatts' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_vars_double' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_put_var_text' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_delete' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_atttype' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_inq_var' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc_get_var_int' > ../fortran/.libs/libnetcdff.so: undefined reference to `nc__create_mp' > collect2: ld returned 1 exit status > make[2]: *** [nf_test] Error 1 > make[2]: Leaving directory > `/data/users/carlos/software/netCDF/netcdf-fortran-4.4.1/nf_test' > make[1]: *** [check-am] Error 2 > make[1]: Leaving directory > `/data/users/carlos/software/netCDF/netcdf-fortran-4.4.1/nf_test' > make: *** [check-recursive] Error 1 > > > > > > > > > > > > > > > > > > > > > > > > Ticket Details =================== Ticket ID: SEL-204074 Department: Support netCDF Priority: Normal Status: Closed
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