Hi Ben,
> sorry to bombard your with questions.
No problem ...
> have you had a minute to consider my last one?
> I have installed hdf5 into the directory:
>
> /mnt/data/bweinste/MEGAN/MEGANv2.10/local/hdf5
OK, but are you sure that's HDF5 version 1.8.8 or later, preferably 1.8.13?
You can check by looking in the file
/mnt/data/bweinste/MEGAN/MEGANv2.10/local/hdf5/lib/libhdf5.settings
for a line like:
HDF5 Version: 1.8.13
which identifies the installed version. An error message you're getting when
trying to run the netCDF tests seems to indicate an older HDF5 version,
1.8.4 (patch1), which is too old to pass the stringent tests in netCDF 4.3.2.
> > =========================================
> >
> > netCDF 4.3.2: ncdump/test-suite.log
> >
> > =========================================
> >
> > # TOTAL: 39
> > # PASS: 37
> > # SKIP: 0
> > # XFAIL: 0
> > # FAIL: 2
> > # XPASS: 0
> > # ERROR: 0
> >
> > .. contents:: :depth: 2
> >
> > FAIL: tst_h_scalar
> >
> > ==================
> >
> > HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 47514256252672:
> > #000: ../../../src/H5T.c line 1595 in H5Tcreate(): unable to create type
To build netCDF, you need to set CPPFLAGS and LDFLAGS to point to your HDF5
installation directories, something like
H5DIR=/mnt/data/bweinste/MEGAN/MEGANv2.10/local/hdf5
CPPFLAGS=-I${H5DIR}/include LDFLAGS=-L${H5DIR}/lib ./configure ...
make check
make install # (or sudo make install)
--Russ
Russ Rew UCAR Unidata Program
address@hidden http://www.unidata.ucar.edu
Ticket Details
===================
Ticket ID: FLE-841916
Department: Support netCDF
Priority: Normal
Status: Closed
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