Hi Dylan, > I build netCDF-4.3.2 (with zlib-1.2.8 and hdf5-1.2.12) - as per > requirements here: > http://www.unidata.ucar.edu/netcdf/docs/getting_and_building_netcdf.html > > $ CPPFLAGS=-I/usr/local/hdf5/include LDFLAGS=-L/usr/local/hdf5/lib > ./configure --enable-netcdf4 --prefix=/usr/local/netCDF4 > > (..and I built zlib and hdf5 using the following configurations > respectively): > > $ ./configure --prefix=/usr/local/zlib > > $./configure --enable-fortran --enable-cxx --with-zlib=/usr/local/zlib > --prefix=/usr/local/hdf5 We don't build or test HDF5 with --enable-fortran or --enable-cxx, as those libraries aren't needed by netCDF-C, but I doubt if that is causing the problem you're seeing. > However I received an error in the 'make check' stage: > > =========================================== > netCDF 4.3.2: nc_test4/test-suite.log > =========================================== > > # TOTAL: 54 > # PASS: 53 > # SKIP: 0 > # XFAIL: 0 > # FAIL: 1 > # XPASS: 0 > # ERROR: 0 > > .. contents:: :depth: 2 > > FAIL: run_grp_rename.sh > ======================= > > > *** Running group_rename test > /#####/#####/Source/netcdf-4.3.2/nc_test4/.libs/lt-renamegroup: error while > loading shared libraries: libhdf5_hl.so.8: cannot open shared object file: > No such file or directory Does libhdf5_hl exist and is it readable in your /usr/local/hdf5/lib/ directory? If so, you may need to set your LD_LIBRARY_PATH environment variable to include /usr/local/hdf5/lib before running "make check". --Russ > ***FAIL: attempt to rename /inner/inner_inner failed > /#####/#####//Source/netcdf-4.3.2/nc_test4/.libs/lt-renamegroup: error > while loading shared libraries: libhdf5_hl.so.8: cannot open shared object > file: No such file or directory > ***FAIL: attempt to rename /inner failed > 12c12 > < group: renamed { > --- > > group: inner { > 26c26 > < group: inner_renamed { > --- > > group: inner_inner { > 29,30c29,30 > < } // group inner_renamed > < } // group renamed > --- > > } // group inner_inner > > } // group inner > ***FAIL: output and reference output differ > /#####/#####/Source/netcdf-4.3.2/nc_test4/.libs/lt-renamegroup: error while > loading shared libraries: libhdf5_hl.so.8: cannot open shared object file: > No such file or directory > ***XFAIL : attempt to rename root group failed as expected > > > O.S Details: Scientific Linux release 6.5 (Carbon), Linux > 2.6.32-431.20.3.el6.x86_64 x86_64 > > Kind Regards, > > Dylan > > Date: Fri, 05 Sep 2014 15:58:16 +1000 > To: address@hidden > From: Dylan McConnell <address@hidden> > Subject: Re: netCDF-4.3.2 test failure on Scientific Linux 6.5 > From address@hidden Thu Sep 4 23: 58:18 > 2014 > > Apologies, it was build with hdf5-1.8.12 (not hdf5-1.2.12, as in the > original email) > > Dylan > > > Russ Rew UCAR Unidata Program address@hidden http://www.unidata.ucar.edu Ticket Details =================== Ticket ID: JHA-515459 Department: Support netCDF Priority: Normal Status: Closed
NOTE: All email exchanges with Unidata User Support are recorded in the Unidata inquiry tracking system and then made publicly available through the web. If you do not want to have your interactions made available in this way, you must let us know in each email you send to us.