Hello, > Hi there, > > I have the most recent version of netcdf installed on my system (CentOS 6), > and was able to link my program with the lib. The program was compiled with > no error, but gave the following error when running. > > ./extract_data.exe: symbol lookup error: ./extract_data.exe: undefined > symbol: netcdf_mp_nf90_open_ > I am less familiar with Fortran than C, but I will be as much help as I can. I would refer you to these links discussing the same/similar issue: https://software.intel.com/en-us/forums/topic/270732 http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg11169.html http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg10104.html http://ubuntuforums.org/archive/index.php/t-1033570.html It would appear you may need to ensure you are using static netcdf libraries, and that the Fortran units calling netCDF function each have a 'use netcdf' statement in the declarations. Hopefully the answer to your question is contained in one of the previous discussions of this issue; if not, please let me know. -Ward > Here is how my Makefile looks like when compiling the program > FC = ifort > FFLAGS= -O3 -xHost -ip -no-prec-div -static-intel > INCLUDE = -I/raid/save/WRF/local_intel/include > LIB = -L/raid/save/WRF/local_intel/lib -lnetcdff -lnetcdf > > SRC = $(wildcard *.f90) > OBJ = $(SRC:.f90=.o) > EXE = $(SRC:.f90=.exe) > > .SUFFIXES : .f90 .exe > > .f90.exe: > $(FC) $(FFLAGS) $< $(INCLUDE) $(LIB) -o $@ > > all : $(EXE) > > The same program was successfully compiled and linked with earlier version > of netcdf (4.1.2), and runs without any error. So I believe the current > issue is with the new netcdf installation, but I cannot figure out where I > might have done wrong. Here is what I did to install the new versions. > > The directory where I installed netcdf is /raid/save/WRF/local_intel, The > versions I got are 4.3.2 for the C lib and 4.2 for the fortran lib. I am > using Intel compiler. The compiler setting was the following and was used > consistently in all steps > > export CC=icc > export CXX=icpc > export CFLAGS='-O3 -xHost -ip -no-prec-div -static-intel' > export CXXFLAGS='-O3 -xHost -ip -no-prec-div -static-intel' > export F77=ifort > export FC=ifort > export F90=ifort > export FFLAGS='-O3 -xHost -ip -no-prec-div -static-intel' > export CPP='icc -E' > export CXXCPP='icpc -E' > > To compile netcdf-4.3.2 first, I used the following: > ./configure --prefix=/raid/save/WRF/local_intel --disable-netcdf-4 > --disable-dap > make check install > > To compile netcdf-fortran-4.2, I used the following > export LD_LIBRARY_PATH=/raid/save/WRF/local_intel/lib:${LD_LIBRARY_PATH} > export CPPFLAGS=-I/raid/save/WRF/local_intel/include > export LDFLAGS=-L/raid/save/WRF/local_intel/lib > ./configure --prefix=/raid/save/WRF/local_intel > make install > > The installation process produced no error, so it looks like things are all > in place. However, that runtime error always show up when running a > program linked with this netcdf lib. Please help. Thanks! > > -Lifeng > > > ----------------------------- > Lifeng Luo, Ph.D. > Assistant Professor > Department of Geography > Rm 124 Geography Building > 673 Auditorium Road > Michigan State University > East Lansing, MI, 48824 > Tel: 517-884-0547 > Fax: 517-432-1671 > Web: http://www.msu.edu/~lluo > ----------------------------- > > Ticket Details =================== Ticket ID: CBC-592345 Department: Support netCDF Priority: Normal Status: Closed
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