Alex, > Thank you for your help with the previous 2 problems. I sorry, but I've > managed to have another issue now. As before, I have successfully installed > the netcdf C library (4.3.1) already, and now I'm trying to install the > fortran library (4.2). I have exported the env variable $LD_LIBRARY_PATH > that points to the lib directory of the netcdf C installation as you > suggested, which allowed the `configure` step to complete without errors. > > However, after I call `configure` on the fortran library as below: > > CC=$HOME/apps/gcc/gcc/bin/gcc CXX=$HOME/apps/gcc/gcc/bin/g++ > FC=$HOME/apps/gcc/gcc/bin/gfortran > CPPFLAGS=-I$HOME/apps/netcdf/4.3.1/include > LDFLAGS=-L$HOME/apps/netcdf/4.3.1/lib ./configure > --prefix=$HOME/apps/netcdf/4.3.1 > > I then get the following error when I call `make check`: > > libtool: compile: /home/fispalma25/apps/gcc/gcc/bin/gcc -DHAVE_CONFIG_H > -I. -I.. -DDLL_EXPORT -I/home/fispalma25/apps/netcdf/4.3.1/include -g -O2 > -MT fort-attio.lo -MD -MP -MF .deps/fort-attio.Tpo -c fort-attio.c -fPIC > -DPIC -o .libs/fort-attio.o > In file included from fort-attio.c:8:0: > *ncfortran.h:24:42: fatal error: NF_INT_IS_C_... not defined: No such file > or directory* > * # include "NF_INT_IS_C_... not defined"* > * ^* > compilation terminated. > > Once again, I'd be grateful for any help you could give me. I've never had > these problems installing netcdf before. I suppose I have overlooked some > detail again. The config.log and fortran/nfconfig.in, fortran/nfconfig.inc > files are attached if they help. I've seen this problem before in config.log, here's the description: http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg11949.html The solution explained there is: You either need to rebuild your gfortran configured with --disable-libquadmath (which means it won't support REAL(16) or COMPLEX(16) types, not required by the Fortran standards as far as I know, or you'll have to install libquadmath to make such support available. You might find it easier to just install a gcc and gfortran compiler pair that are known to have been built compatibly. There is no need to have the very latest gcc/gfortran. I'd recommend just getting the compilers from a package management system that makes binaries available, such as "yum". --Russ > address@hidden> wrote: > > > Hi Alex, > > > > > Thanks for the help. I recompiled hdf5 with zlib enabled and now the all > > > the tests for the netcdf c library have been passed, and I installed > > > successfully. > > > > > > However, now I am not able to successfully install the fortran > > > (netcdf-fortran-4.2) library. I get the following error: > > > > > > checking size of off_t... configure: error: in > > > `/home/fispalma25/apps/netcdf/netcdf-fortran-4.2': > > > configure: error: cannot compute sizeof (off_t) > > > See `config.log' for more details > > > > > > I have attached `config.log` in case that helps. I would appreciate any > > > advice you can provide. > > > > Since you installed the netCDF C library as a shared library in a location > > that is > > not searched by default, you need to set the LD_LIBRARY_PATH environment > > variable (or the equivalent DYLD_LIBRARY_PATH for OSX) , as described here: > > > > http://www.unidata.ucar.edu/netcdf/docs/netcdf-fortran-install.html > > > > This is in addition to the LDFLAGS you are giving the compiler, because the > > LD_LIBRARY_PATH is used by the loader to find shared libraries. > > > > --Russ > > > > > Cheers, > > > Alex > > > > > > > > > > > > > > > > > > address@hidden> wrote: > > > > > > > On 1/23/14, 9:27 AM, Alex Robinson wrote: > > > > > New Ticket: netcdf Make check error > > > > > > > > > > This test failed during `Make check`: > > > > > > > > > > *** Checking HDF5 variable functions. > > > > > *** Checking HDF5 boolen variables...ok. > > > > > *** Checking HDF5 variable with unlimited dimension...ok. > > > > > *** Checking HDF5 deflate filter setting and getting...Sorry! > > Unexpected > > > > > result, tst_h_vars.c, line: 230 > > > > > FAIL: tst_h_vars > > > > > > > > > > I am installing netCDF version 4.3.1 with HDF5 version 1.8.12. > > > > > > > > > > Am I doing something wrong? > > > > > > > > > > Thanks, > > > > > Alex > > > > > > > > > > > > > > Frequently this is caused by an HDF5 install that was not compiled > > > > with zlib compression enabled. It may also be caused if HDF5 was > > > > compiled with SZIP support but if netCDF was not. If you provide > > > > the config.log file, I will be happy to take a look, but the first step > > > > will be to ensure that you are using an HDF5 compiled with zlib > > > > support. > > > > > > > > Thanks! > > > > > > > > -Ward > > > > > > > > > > > > > > > > Ticket Details > > > > =================== > > > > Ticket ID: FUW-295578 > > > > Department: Support netCDF > > > > Priority: Normal > > > > Status: Open > > > > > > > > > > > > > > > > > -- > > > Alexander Robinson > > > Dpto. AstrofÃsica y CC de la AtmÃsfera > > > Facultad de CC FÃsicas > > > Universidad Complutense de Madrid > > > 28040 Madrid, Spain > > > --------------------------------- > > > Tel (Fax): +34 91 394 4457 (4635) > > > > > > > > Russ Rew UCAR Unidata Program > > address@hidden http://www.unidata.ucar.edu > > > > > > > > Ticket Details > > =================== > > Ticket ID: FUW-295578 > > Department: Support netCDF > > Priority: Normal > > Status: Closed > > > > > > > -- > Alexander Robinson > Dpto. AstrofÃsica y CC de la AtmÃsfera > Facultad de CC FÃsicas > Universidad Complutense de Madrid > 28040 Madrid, Spain > --------------------------------- > Tel (Fax): +34 91 394 4457 (4635) > > Russ Rew UCAR Unidata Program address@hidden http://www.unidata.ucar.edu Ticket Details =================== Ticket ID: FUW-295578 Department: Support netCDF Priority: Normal Status: Closed
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