Hi Alex, > Thanks for the help. I recompiled hdf5 with zlib enabled and now the all > the tests for the netcdf c library have been passed, and I installed > successfully. > > However, now I am not able to successfully install the fortran > (netcdf-fortran-4.2) library. I get the following error: > > checking size of off_t... configure: error: in > `/home/fispalma25/apps/netcdf/netcdf-fortran-4.2': > configure: error: cannot compute sizeof (off_t) > See `config.log' for more details > > I have attached `config.log` in case that helps. I would appreciate any > advice you can provide. Since you installed the netCDF C library as a shared library in a location that is not searched by default, you need to set the LD_LIBRARY_PATH environment variable (or the equivalent DYLD_LIBRARY_PATH for OSX) , as described here: http://www.unidata.ucar.edu/netcdf/docs/netcdf-fortran-install.html This is in addition to the LDFLAGS you are giving the compiler, because the LD_LIBRARY_PATH is used by the loader to find shared libraries. --Russ > Cheers, > Alex > > > > > > address@hidden> wrote: > > > On 1/23/14, 9:27 AM, Alex Robinson wrote: > > > New Ticket: netcdf Make check error > > > > > > This test failed during `Make check`: > > > > > > *** Checking HDF5 variable functions. > > > *** Checking HDF5 boolen variables...ok. > > > *** Checking HDF5 variable with unlimited dimension...ok. > > > *** Checking HDF5 deflate filter setting and getting...Sorry! Unexpected > > > result, tst_h_vars.c, line: 230 > > > FAIL: tst_h_vars > > > > > > I am installing netCDF version 4.3.1 with HDF5 version 1.8.12. > > > > > > Am I doing something wrong? > > > > > > Thanks, > > > Alex > > > > > > > > Frequently this is caused by an HDF5 install that was not compiled > > with zlib compression enabled. It may also be caused if HDF5 was > > compiled with SZIP support but if netCDF was not. If you provide > > the config.log file, I will be happy to take a look, but the first step > > will be to ensure that you are using an HDF5 compiled with zlib > > support. > > > > Thanks! > > > > -Ward > > > > > > > > Ticket Details > > =================== > > Ticket ID: FUW-295578 > > Department: Support netCDF > > Priority: Normal > > Status: Open > > > > > > > -- > Alexander Robinson > Dpto. AstrofÃsica y CC de la AtmÃsfera > Facultad de CC FÃsicas > Universidad Complutense de Madrid > 28040 Madrid, Spain > --------------------------------- > Tel (Fax): +34 91 394 4457 (4635) > > Russ Rew UCAR Unidata Program address@hidden http://www.unidata.ucar.edu Ticket Details =================== Ticket ID: FUW-295578 Department: Support netCDF Priority: Normal Status: Closed
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