Hi Bhupendra. What is the output of the command $ ldd /home/bhupendra/Downloads/netcdf-4.3.0/h5_test/tst_h_files Also, what is the output of $ file -L /usr/local/lib/libhdf5.so.8 and $ ls -lL /usr/local/lib/libhdf5.so.8 --Russ > Package Version: netcdf-4.3.0 > Operating System: Linux Mint 64bit Kernel 3.11.0-12-generic dual boot with > Mac OSX > Hardware: Apple Macbook Pro > Description of problem: 1. Previously, I have installed netcdf on Mac OSX. > Now I am trying to install it on a Linux machine (Linux Mint-16 64bit). > I have installed zlib-1.2.8.tar.gz and hdf5-1.8.12.tar.gz with gcc-4.8.1 > I set hdf5 path as follow and use make check after installation. > $ ./configure --prefix=/usr/local/ --enable-fortran --enable-cxx > --with-szlib=/usr/local/lib > > 2. 'ls' to my /usr/local lib looks like this > libhdf5.a libhdf5_hl_cpp.la libhdf5.la > libhdf5_cpp.a libhdf5_hl_cpp.so libhdf5.settings > libhdf5_cpp.la libhdf5_hl_cpp.so.8 libhdf5.so > libhdf5_cpp.so libhdf5_hl_cpp.so.8.0.1 libhdf5.so.8 > libhdf5_cpp.so.8 libhdf5hl_fortran.a libhdf5.so.8.0.1 > libhdf5_cpp.so.8.0.1 libhdf5hl_fortran.la libz.a > libhdf5_fortran.a libhdf5hl_fortran.so libz.so > libhdf5_fortran.la libhdf5hl_fortran.so.8 libz.so.1 > libhdf5_fortran.so libhdf5hl_fortran.so.8.0.1 libz.so.1.2.8 > libhdf5_fortran.so.8 libhdf5_hl.la pkgconfig > libhdf5_fortran.so.8.0.1 libhdf5_hl.so python2.7 > libhdf5_hl.a libhdf5_hl.so.8 python3.3 > libhdf5_hl_cpp.a libhdf5_hl.so.8.0.1 site_ruby > So I believe all is good. > > 3. Then I configured netcdf with > $ CPPFLAGS=-I/usr/local/include/ LDFLAGS=-L/usr/local/lib/ ./configure > --prefix=/usr/local/ > So far so good. > > 4. Then I used several variants of "make check" w/o 'sudo' and 'make check > install' but I am getting following output for all my attempts. > ===Shell Output starts====================================== > address@hidden ~/Downloads/netcdf-4.3.0 $ sudo make check > Making check in include > make[1]: Entering directory `/home/bhupendra/Downloads/netcdf-4.3.0/include' > make[1]: Nothing to be done for `check'. > make[1]: Leaving directory `/home/bhupendra/Downloads/netcdf-4.3.0/include' > Making check in h5_test > make[1]: Entering directory `/home/bhupendra/Downloads/netcdf-4.3.0/h5_test' > make tst_h_files tst_h_files2 tst_h_files4 tst_h_atts tst_h_atts3 > tst_h_atts4 tst_h_vars tst_h_vars2 tst_h_vars3 tst_h_grps tst_h_compounds > tst_h_compounds2 tst_h_wrt_cmp tst_h_rd_cmp tst_h_vl tst_h_opaques > tst_h_strings tst_h_strings1 tst_h_strings2 tst_h_ints tst_h_dimscales > tst_h_dimscales1 tst_h_dimscales2 tst_h_dimscales3 tst_h_enums > tst_h_dimscales4 > make[2]: Entering directory `/home/bhupendra/Downloads/netcdf-4.3.0/h5_test' > make[2]: `tst_h_files' is up to date. > make[2]: `tst_h_files2' is up to date. > make[2]: `tst_h_files4' is up to date. > make[2]: `tst_h_atts' is up to date. > make[2]: `tst_h_atts3' is up to date. > make[2]: `tst_h_atts4' is up to date. > make[2]: `tst_h_vars' is up to date. > make[2]: `tst_h_vars2' is up to date. > make[2]: `tst_h_vars3' is up to date. > make[2]: `tst_h_grps' is up to date. > make[2]: `tst_h_compounds' is up to date. > make[2]: `tst_h_compounds2' is up to date. > make[2]: `tst_h_wrt_cmp' is up to date. > make[2]: `tst_h_rd_cmp' is up to date. > make[2]: `tst_h_vl' is up to date. > make[2]: `tst_h_opaques' is up to date. > make[2]: `tst_h_strings' is up to date. > make[2]: `tst_h_strings1' is up to date. > make[2]: `tst_h_strings2' is up to date. > make[2]: `tst_h_ints' is up to date. > make[2]: `tst_h_dimscales' is up to date. > make[2]: `tst_h_dimscales1' is up to date. > make[2]: `tst_h_dimscales2' is up to date. > make[2]: `tst_h_dimscales3' is up to date. > make[2]: `tst_h_enums' is up to date. > make[2]: `tst_h_dimscales4' is up to date. > make[2]: Leaving directory `/home/bhupendra/Downloads/netcdf-4.3.0/h5_test' > make check-TESTS > make[2]: Entering directory `/home/bhupendra/Downloads/netcdf-4.3.0/h5_test' > ./tst_h_files: error while loading shared libraries: libhdf5.so.8: cannot > open shared object file: No such file or directory > FAIL: tst_h_files > ./tst_h_files2: error while loading shared libraries: libhdf5.so.8: cannot > open shared object file: No such file or directory > FAIL: tst_h_files2 > ./tst_h_files4: error while loading shared libraries: libhdf5.so.8: cannot > open shared object file: No such file or directory > FAIL: tst_h_files4 > ./tst_h_atts: error while loading shared libraries: libhdf5_hl.so.8: cannot > open shared object file: No such file or directory > FAIL: tst_h_atts > > *** Checking HDF5 attribute functions some more. > *** Tests successful! > PASS: tst_h_atts3 > > *** Checking HDF5 attribute functions for memory leaks. > *** Tests successful! > PASS: tst_h_atts4 > ./tst_h_vars: error while loading shared libraries: libhdf5.so.8: cannot open > shared object file: No such file or directory > FAIL: tst_h_vars > ./tst_h_vars2: error while loading shared libraries: libhdf5_hl.so.8: cannot > open shared object file: No such file or directory > FAIL: tst_h_vars2 > ./tst_h_vars3: error while loading shared libraries: libhdf5.so.8: cannot > open shared object file: No such file or directory > FAIL: tst_h_vars3 > ./tst_h_grps: error while loading shared libraries: libhdf5.so.8: cannot open > shared object file: No such file or directory > FAIL: tst_h_grps > ./tst_h_compounds: error while loading shared libraries: libhdf5.so.8: cannot > open shared object file: No such file or directory > FAIL: tst_h_compounds > ./tst_h_compounds2: error while loading shared libraries: libhdf5.so.8: > cannot open shared object file: No such file or directory > FAIL: tst_h_compounds2 > ./tst_h_wrt_cmp: error while loading shared libraries: libhdf5.so.8: cannot > open shared object file: No such file or directory > FAIL: tst_h_wrt_cmp > ./tst_h_rd_cmp: error while loading shared libraries: libhdf5.so.8: cannot > open shared object file: No such file or directory > FAIL: tst_h_rd_cmp > ./tst_h_vl: error while loading shared libraries: libhdf5.so.8: cannot open > shared object file: No such file or directory > FAIL: tst_h_vl > ./tst_h_opaques: error while loading shared libraries: libhdf5.so.8: cannot > open shared object file: No such file or directory > FAIL: tst_h_opaques > ./tst_h_strings: error while loading shared libraries: libhdf5.so.8: cannot > open shared object file: No such file or directory > FAIL: tst_h_strings > ./tst_h_strings1: error while loading shared libraries: libhdf5.so.8: cannot > open shared object file: No such file or directory > FAIL: tst_h_strings1 > ./tst_h_strings2: error while loading shared libraries: libhdf5.so.8: cannot > open shared object file: No such file or directory > FAIL: tst_h_strings2 > ./tst_h_ints: error while loading shared libraries: libhdf5.so.8: cannot open > shared object file: No such file or directory > FAIL: tst_h_ints > ./tst_h_dimscales: error while loading shared libraries: libhdf5_hl.so.8: > cannot open shared object file: No such file or directory > FAIL: tst_h_dimscales > ./tst_h_dimscales1: error while loading shared libraries: libhdf5_hl.so.8: > cannot open shared object file: No such file or directory > FAIL: tst_h_dimscales1 > ./tst_h_dimscales2: error while loading shared libraries: libhdf5_hl.so.8: > cannot open shared object file: No such file or directory > FAIL: tst_h_dimscales2 > ./tst_h_dimscales3: error while loading shared libraries: libhdf5_hl.so.8: > cannot open shared object file: No such file or directory > FAIL: tst_h_dimscales3 > ./tst_h_enums: error while loading shared libraries: libhdf5.so.8: cannot > open shared object file: No such file or directory > FAIL: tst_h_enums > ./tst_h_dimscales4: error while loading shared libraries: libhdf5_hl.so.8: > cannot open shared object file: No such file or directory > FAIL: tst_h_dimscales4 > ================================================ > 24 of 26 tests failed > Please report to address@hidden > ================================================ > make[2]: *** [check-TESTS] Error 1 > make[2]: Leaving directory `/home/bhupendra/Downloads/netcdf-4.3.0/h5_test' > make[1]: *** [check-am] Error 2 > make[1]: Leaving directory `/home/bhupendra/Downloads/netcdf-4.3.0/h5_test' > make: *** [check-recursive] Error 1 > ===========Shell output Ends============================= > > 5. It looks like netcdf is not looking in /usr/local/lib/ for the hdf5 > libraries. > I have /usr/local/lib/ in my $LD_LIBRARY_PATH. > I have also read and try following fixes on the unidata support forum without > any luck. :( > http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg10943.html > http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg11044.html > http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg10958.html > http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg11607.html > > Russ Rew UCAR Unidata Program address@hidden http://www.unidata.ucar.edu Ticket Details =================== Ticket ID: FRY-525370 Department: Support netCDF Priority: Normal Status: Closed
NOTE: All email exchanges with Unidata User Support are recorded in the Unidata inquiry tracking system and then made publicly available through the web. If you do not want to have your interactions made available in this way, you must let us know in each email you send to us.