Hi Michael, > I read in another thread that you wanted config.log and output from the > make check, so here you have that aswell. I think the problem is the old version of HDF5 (1.8.4) you are using with a new version of netCDF (4.3.0). We didn't test netCDF 4.3.0 with versions of HDF5 before 1.8.9, and recommend using it with HDF5 1.8.11. Earlier versions of HDF5 had bugs that affected netCDF, which tests that those bugs have been fixed when "make check" is invoked. I just tried building netCDF-4.3.0 with HDF5-1.8.4p1, and it got an error from "make check" similar to what you are seeing. I recommend building HDF5-1.8.11 from source and installing that before trying to build netCDF-4.3.0. The HDF5 build is very robust and builds on most systems with no problems. You can just use all the defaults for configure except you should add --enable-parallel and use CC=mpicc if you want parallel HDF5, required for parallel netCDF-4. Here's instructions: http://www.unidata.ucar.edu/netcdf/docs/build_default.html http://www.unidata.ucar.edu/netcdf/docs/build_parallel.html --Russ > -------- Original Message -------- > Subject: Fwd: netcdf parallel compilation: nc_test fail > Date: Wed, 18 Sep 2013 11:58:42 +0200 > From: Michael Burger <address@hidden> > Reply-To: address@hidden > To: address@hidden > > > > I forgot to mention that I also set: > > declare -x H5DIR=/usr > declare -x CPPFLAGS="-I/usr/inlude" > declare -x CC=mpicc > declare -x LDFLAGS=-L/usr/lib > declare -x LIBS=-ldl > > > -------- Original Message -------- > Subject: netcdf parallel compilation: nc_test fail > Date: Wed, 18 Sep 2013 11:53:35 +0200 > From: Michael Burger <address@hidden> > Reply-To: address@hidden > To: address@hidden > > > > I installed Ubuntu 10.04 LTS (amd64) and added: > > mpich2 > mpich-bin > libmpich2-1.2 > libmpich2-dev > zlib1g > zlib1g-dev > gfortran > g++ > libstdc++6-4.4-dev > hdf5-tools > libhdf5-mpich-1.8.4 > libhdf5-mpich-dev > libjpeg62-dev > libmpich1.0-dev > libmpich1.0gf > libhdf5-doc > mpi-doc > > uname -a: > > Linux misu197 2.6.32-51-generic #113-Ubuntu SMP Wed Aug 21 19:46:35 UTC > 2013 x86_64 GNU/Linux > > Unpacked netcdf-4.3.0.tar.gz > ./configure --prefix=/local/opt/netcdf --disable-shared > --enable-parallel-tests > > > > > > > Russ Rew UCAR Unidata Program address@hidden http://www.unidata.ucar.edu Ticket Details =================== Ticket ID: IKM-527849 Department: Support netCDF Priority: Normal Status: Closed
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