Hi Peter or Brian, > In the meantime, I did try the build with HDF5.1.8.9, and managed to get > through the netcdf-4.3.0 installation. > I have an installed binary on /usr/local/netcdf4.3-intel/nc430_hdf5_189sz. > > When the script proceeds with netcdf-fortran-4.2, it then fails. From these errors in config.log, it appears the environment is not set up correctly for running icc: configure:3796: checking whether the C compiler works configure:3818: /opt/intel/composer_xe_2013.0.079/bin/intel64/icc -O3 -xHost -ip -no-prec-div -static-intel -I/usr/local/netcdf4.3-intel/nc430_hdf5_189sz/include -I/usr/local/netcdf4.3-intel/hdf5_189sz/include -L/usr/local/netcdf4.3-intel/nc430_hdf5_189sz/lib -L/usr/local/netcdf4.3-intel/hdf5_189sz/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl >&5 icc: warning #10237: -lcilkrts linked in dynamically, static library not available ld: warning: libimf.so, needed by /usr/local/netcdf4.3-intel/nc430_hdf5_189sz/lib/libnetcdf.so, not found (try using -rpath or -rpath-link) ld: warning: libsvml.so, needed by /usr/local/netcdf4.3-intel/nc430_hdf5_189sz/lib/libnetcdf.so, not found (try using -rpath or -rpath-link) ld: warning: libirng.so, needed by /usr/local/netcdf4.3-intel/nc430_hdf5_189sz/lib/libnetcdf.so, not found (try using -rpath or -rpath-link) ld: warning: libintlc.so.5, needed by /usr/local/netcdf4.3-intel/nc430_hdf5_189sz/lib/libnetcdf.so, not found (try using -rpath or -rpath-link) ld: a.out: hidden symbol `__intel_cpu_indicator_init' in /opt/intel/composer_xe_2013.0.079/compiler/lib/intel64/libirc.a(cpu_disp.o) is referenced by DSO ld: final link failed: Nonrepresentable section on output configure:3822: $? = 1 configure:3860: result: no All those libraries libimf, libsvml, libirng, and libintlc are supposed to be installed for icc. Have you run source /opt/intel/bin/iccvars.sh intel64 before compiling with icc in this shell? --Russ > configure: error: C compiler cannot create executables > See `config.log' for more details > make: *** No rule to make target `check'. Stop. > > I have attached the script, make.log and config.log on netcdf-fortran-4.2. > > Much appreciated if you can look into this too. > > By the way, I need to be away for few days. I might need to ask my colleague > Brian Coan to liaise with you on this. > You can reach us on address@hidden > > Thanks. > Regards, > Peter > > > ________________________________________ > From: Unidata netCDF Support address@hidden > Sent: 21 June 2013 22:13 > To: Chiu, Peter (STFC,RAL,RALSP) > Cc: address@hidden > Subject: [netCDF #JZT-105309]: neCDF 4.3.0 installation issue - Can't find or > link to the hdf5 library > > Oops, sorry, I just noticed the error you are seeing in h5dump was caused > by a last minute "simplification" I made to the script I included which was > actually a mistake. The line for building HDF5-1.8.11 should be corrected > from > > ./configure --prefix=${H5DIR} --with-szlib=${SZDIR} && make check install > > to > > ./configure --prefix=${H5DIR} --with-szlib=${SZDIR} && make all check install > > because otherwise the utilities like h5dump don't get built before they're > needed in some of the tests. > > I'm testing again with that fix and it looks like things are OK. > > Sorry! > > --Russ > > > > Peter, > > > > > Looks like not my luck day. > > > > > > I have tried downloaded the HDF5 1.8.11, but unfortunately the hdf5 wont > > > build with the Intel compilers. > > > It failed on some H5dump tests. I have attached the logs. > > > > The configure for HDF5-1.8.11 worked fine. > > > > I can't see what H5dump test failed in the files you attached, which seem to > > be for the netCDF-4.3.0 build rather than the HDF5-1.8.11 build. If you > > still > > have the log or details for that failure, could you send them? > > > > I also can't see the details of what went wrong in the netCDF-4.3.0 test, > > for > > which the apps3-build-netcdf-hdf5.1811.log just reports one failure in > > nc_test > > and says > > > > See nc_test/test-suite.log > > > > If you've still got that, could you send it? It's possible it is a bug in a > > test rather than the library code. > > > > --Russ > > > > > I am retrying this with HDF5 1.8.9. > > > > > > Peter > > > > > -- > Scanned by iCritical. > > > Russ Rew UCAR Unidata Program address@hidden http://www.unidata.ucar.edu Ticket Details =================== Ticket ID: JZT-105309 Department: Support netCDF Priority: Normal Status: Closed
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